Browse Element(s) Details


Os.54857.1.S1_at

Description gb:AK106918.1
DB_XREF= gi:32992127
TID=Os.54857.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B02, full insert sequence.
FL= gb:AK106918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5675011/11F-box domain containing protein, expressed
LOC_Os10g118701/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56720Os.55206.1.A1_at11/112+34763775..34765299NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54857.1.S1_at--903--3751Chr02:34790291..34790315 (25 bp)
CTCATCGTGCAAGGCATCGAGCTAA
LOC_Os02g56750
Os.54857.1.S1_at--1157--5891Chr02:34790309..34790333 (25 bp)
GAGCTAAGGCCCAAATGCACCAGCA
LOC_Os02g56750
Os.54857.1.S1_at--350--1451Chr02:34790487..34790511 (25 bp)
AGAAGCTGCTTCAATCTGATCATAT
LOC_Os02g56750
Os.54857.1.S1_at--825--911Chr02:34790515..34790539 (25 bp)
AGGCTAGACGAGCATTTGATCGATC
LOC_Os02g56750
Os.54857.1.S1_at--1104--9031Chr02:34790554..34790578 (25 bp)
TGCAGCTGTTTTGCGTTGTGACGTG
LOC_Os02g56750
Os.54857.1.S1_at--384--6631Chr02:34790568..34790592 (25 bp)
GTTGTGACGTGTTAGCTTTTATGCA
LOC_Os02g56750
Os.54857.1.S1_at--889--4951Chr02:34790590..34790614 (25 bp)
GCATATGCATGTCGTTTTATCGTAC
LOC_Os02g56750
Os.54857.1.S1_at--943--4951Chr02:34790631..34790655 (25 bp)
GCATATAAGCATGGCTCATCTAGGT
LOC_Os02g56750
Os.54857.1.S1_at--473--9611Chr02:34790646..34790670 (25 bp)
TCATCTAGGTGGTGCCAGAAGCTCA
LOC_Os02g56750
Os.54857.1.S1_at--726--5091Chr02:34790700..34790724 (25 bp)
GCACGCTCGTGTCATCAGTAGTGTA
LOC_Os02g56750
Os.54857.1.S1_at--179--2872Chr02:34790727..34790751 (25 bp)
AAGTGTTATTTGCTGTACTCCTACA
LOC_Os02g56750
Target Sequence 
CTCATCGTGCAAGGCATCGAGCTAAGGCCCAAATGCACCAGCAAATTAATTAAACTCGATAGCTAGCTAACTCGATTATT
GATCGATCATTGCATTGCATGTAAATGTTCCTAAATTTTTTTTCCCGGGGGAGAATTCGATCGATCAGTGAGAGAGCAAA
CCAATAACGCATCAATTAAGCATATGTGATTGATTAAGAAGCTGCTTCAATCTGATCATATATCAGGCTAGACGAGCATT
TGATCGATCAAGCACTAGCTAGCTGCAGCTGTTTTGCGTTGTGACGTGTTAGCTTTTATGCATATGCATGTCGTTTTATC
GTACATGTACACGCATGACAGCATATAAGCATGGCTCATCTAGGTGGTGCCAGAAGCTCAGAGAGAACTTGATTGACAGT
GTGCATGCTGCACGCTCGTGTCATCAGTAGTGTAGAAAGTGTTATTTGCTGTACTCCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis