Browse Element(s) Details


Os.54917.1.S1_at

Description gb:AK107097.1
DB_XREF= gi:32992306
TID=Os.54917.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H09, full insert sequence.
FL= gb:AK107097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54917.1.S1_at--226--4711Chr03:35353565..35353589 (25 bp)
GCTGGCGGCCAAAGGTCGTTGTTTA
LOC_Os03g62550
Os.54917.1.S1_at--121--4051Chr03:35353502..35353526 (25 bp)
CGATTCTTGCCACTTATGTCAGCGA
LOC_Os03g62550
Os.54917.1.S1_at--115--6011Chr03:35353471..35353495 (25 bp)
GAGAGCTGTTTGCATCTTTTCCTAA
LOC_Os03g62550
Os.54917.1.S1_at--1004--3651Chr03:35353456..35353480 (25 bp)
CTTTTCCTAACCTGCGATTTATCCA
LOC_Os03g62550
Os.54917.1.S1_at--49--10291Chr03:35353390..35353414 (25 bp)
TTTGCGCCACCAACAATCAACGATA
LOC_Os03g62550
Os.54917.1.S1_at--802--5911Chr03:35353337..35353361 (25 bp)
GAGACTGAATTTTTGGACGGGCTAT
LOC_Os03g62550
Os.54917.1.S1_at--15--291Chr03:35353314..35353338 (25 bp)
ATAGGGACATTTTCGACGGCGTCTT
LOC_Os03g62550
Os.54917.1.S1_at--74--9812Chr01:20239584..20239603 (20 bp)
TAACCTGCTGGTTCCTGTGGAAGGA
NONE
Os.54917.1.S1_at--455--7191Chr03:35353175..35353199 (25 bp)
GTCGGCAGGAATTTTCACCACTTGT
LOC_Os03g62550
Os.54917.1.S1_at--981--10292Chr09:15586737..15586772 (25 bp)
TTTCCCCAATCATTTCGTCGTTGTA
NONE
Os.54917.1.S1_at--780--2933Chr05:1442041..1442065 (25 bp)
AATGATCCTTTCTCCCAATCTTAAT
NONE
Target Sequence 
GCTGGCGGCCAAAGGTCGTTGTTTAACAGCTGATAATCTTGAGAAGAGAGGGTGGTTGCACGACGATTCTTGCCACTTAT
GTCAGCGAGAGGAGGAGAGCTGTTTGCATCTTTTCCTAACCTGCGATTTATCCAGGAGAGTCTGGACTTTGATGCAAAGA
TGGATTGGCATCGGCTTTGCGCCACCAACAATCAACGATACAAGCCTAACTGAATGGTGGATGGCGGCGAGACTGAATTT
TTGGACGGGCTATAGGGACATTTTCGACGGCGTCTTCGCACTAACCTGCTGGTTCCTGTGGAAGGAGCGTAATGCGCGAG
TGTTCGAGCAGAAATTTTGAAGCACAGAGCAGCTAGTGAGCGACATCAAGGAGGAGATCCTCATTTGGAAGTCGGCAGGA
ATTTTCACCACTTGTAATGGCGATAATGATTAATTTGTAATCCCTGTAGCATACAACTATAGCTTACATGGTTGGGGTTT
TTTCCCCAATCATTTCGTCGTTGTAAGCTTCTATTGTAATGATCCTTTCTCCCAATCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis