Browse Element(s) Details


Os.5495.1.S1_at

Description gb:AK100647.1
DB_XREF= gi:32985856
TID=Os.5495.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L18, full insert sequence.
FL= gb:AK069194.1 gb:AK100647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3771011/11dihydrofolate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37680NANA4+22192829..22193782esterase, putative
LOC_Os04g37690Os.7792.1.S1_at11/114+22195425..22200084RNA recognition motif family protein, expressed
LOC_Os04g37700Os.10245.1.S1_at11/114+22206374..22207491expressed protein
LOC_Os04g37710Os.5495.1.S1_at11/114+22209757..22212504dihydrofolate reductase, putative, expressed
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5495.1.S1_at--442--5731Chr04:22210334..22210354 (21 bp)
GACTGATGGGTTTCTCTCAGGGCTC
LOC_Os04g37710
Os.5495.1.S1_at--161--6611Chr04:22210630..22210654 (25 bp)
GTTGGCCCTGACTAGAGTTCCTAAG
LOC_Os04g37710
Os.5495.1.S1_at--414--3551Chr04:22210672..22210696 (25 bp)
CATAGGAGGCGCCAAGTTTCAGTCG
LOC_Os04g37710
Os.5495.1.S1_at--1047--3171Chr04:22210723..22210747 (25 bp)
CAATAACATCAAATGCCCCTCGGTT
LOC_Os04g37710
Os.5495.1.S1_at--1101--4271Chr04:22211395..22211415 (21 bp)
CCTCGGTGACACTGACTTTCTGAAA
LOC_Os04g37710
Os.5495.1.S1_at--325--10551Chr04:22211455..22211479 (25 bp)
TTCATCATACGTCATCCAAAGGGCC
LOC_Os04g37710
Os.5495.1.S1_at--1048--6091Chr04:22212245..22212269 (25 bp)
GAGTCTGGAAATCATGCTCCGTTTC
LOC_Os04g37710
Os.5495.1.S1_at--1129--9071Chr04:22212259..22212283 (25 bp)
TGCTCCGTTTCCTCGATAAGATTGA
LOC_Os04g37710
Os.5495.1.S1_at--1136--4791Chr04:22212296..22212320 (25 bp)
GCTCGAGCATTCATCCACTGATGTT
LOC_Os04g37710
Os.5495.1.S1_at--100--5351Chr04:22212351..22212375 (25 bp)
GAAGATTAGTGTCCAGTCCAGATAC
LOC_Os04g37710
Os.5495.1.S1_at--789--6631Chr04:22212407..22212431 (25 bp)
GTTGTACTTGTATCCTCCTTATTTA
LOC_Os04g37710
Target Sequence 
GACTGATGGGTTTCTCTCAGGGCTCGANTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGA
GTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAA
TAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCAT
ATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTC
CGTTTCCTCGATAAGATTGAGAAGGAGANNGNCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGT
GAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCT
CCTTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis