Browse Element(s) Details


Os.54950.1.S1_at

Description gb:AK107170.1
DB_XREF= gi:32992379
TID=Os.54950.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G02, full insert sequence.
FL= gb:AK107170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1195011/11CRAL/TRIO domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54950.1.S1_at--366--4011Chr03:6246489..6246513 (25 bp)
CGTCGATGCTGTTCGCGTTCAAGAA
LOC_Os03g11950
Os.54950.1.S1_at--136--6051Chr03:6246593..6246617 (25 bp)
GAGATATCGTATCGCGCCAAGATGC
LOC_Os03g11950
Os.54950.1.S1_at--197--3431Chr03:6246743..6246767 (25 bp)
CAGAGGATCTGATCTGAACTCCAGA
LOC_Os03g11950
Os.54950.1.S1_at--100--1311Chr03:6246765..6246789 (25 bp)
AGATGATCTCCCGTTGCTGAAGCAT
LOC_Os03g11950
Os.54950.1.S1_at--394--10711Chr03:6246778..6246802 (25 bp)
TTGCTGAAGCATGAATCCAACCGAT
LOC_Os03g11950
Os.54950.1.S1_at--767--9211Chr03:6246793..6246817 (25 bp)
TCCAACCGATGAAGCTAGCGTTCTT
LOC_Os03g11950
Os.54950.1.S1_at--1040--9991Chr03:6246808..6246832 (25 bp)
TAGCGTTCTTCTCCATACATTTTAC
LOC_Os03g11950
Os.54950.1.S1_at--827--10771Chr03:6246863..6246887 (25 bp)
TTGATCTTTTGTCGACATTTTCCCC
LOC_Os03g11950
Os.54950.1.S1_at--97--4211Chr03:6246886..6246910 (25 bp)
CCCCAGTATTTACCTCCTAGGATAT
LOC_Os03g11950
Os.54950.1.S1_at--1139--4271Chr03:6246901..6246925 (25 bp)
CCTAGGATATTCTTCAACCCGTGTA
LOC_Os03g11950
Os.54950.1.S1_at--575--6071Chr03:6246946..6246970 (25 bp)
GAGTAAAATCGACCCCTTTTGCAGC
LOC_Os03g11950
Target Sequence 
CGTCGATGCTGTTCGCGTTCAAGAAGGACGGCCAGGCCAGCCGCGGCGAGCGGGAGCGCGAGTCCTTCCTGCCGTTCCTC
CGCTTCTACCGCCGCCCCTACGACGAGATATCGTATCGCGCCAAGATGCGGCCGCCGCTGGGCGGGCTCATCGCCATCGT
CGACGAGAAGTCGAAGCAGCACAAGACGGTGCAGCCGCCGCTGCGACGGCACGCCGGGCTCCACCACCAGCAGCTGTTCC
AGCTCCACCACCACCAGAGGATCTGATCTGAACTCCAGATGATCTCCCGTTGCTGAAGCATGAATCCAACCGATGAAGCT
AGCGTTCTTCTCCATACATTTTACAGCATAATCCAATGCTATAATTATGCTAAGTTGATCTTTTGTCGACATTTTCCCCC
CAGTATTTACCTCCTAGGATATTCTTCAACCCGTGTAAAATAACAGCCCTAAAATGTGAGTAAAATCGACCCCTTTTGCA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis