Browse Element(s) Details


Os.54959.1.S1_at

Description gb:AK107190.1
DB_XREF= gi:32992399
TID=Os.54959.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A03, full insert sequence.
FL= gb:AK107190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4686011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54959.1.S1_at--480--651Chr03:26457547..26457571 (25 bp)
ATGCACCGCCATCATAACCATCATG
LOC_Os03g46860
Os.54959.1.S1_at--235--7771Chr03:26454870..26454894 (25 bp)
GGTGAGCGTCACAGCTGAGGACATT
LOC_Os03g46860
Os.54959.1.S1_at--628--5391Chr03:26454840..26454864 (25 bp)
GAAGCTAAACACTGTGCTCCAGCAA
LOC_Os03g46860
Os.54959.1.S1_at--111--5151Chr03:26454773..26454797 (25 bp)
GCAACAAACGACAGCTGCTAGCTAG
LOC_Os03g46860
Os.54959.1.S1_at--275--8311Chr03:26454745..26454769 (25 bp)
GGCTAGCTACTCAATCAGGCATGTT
LOC_Os03g46860
Os.54959.1.S1_at--332--6691Chr03:26454723..26454747 (25 bp)
GTTGCCATTGATTCCAGAACAGTGT
LOC_Os03g46860
Os.54959.1.S1_at--336--3791Chr03:26454674..26454698 (25 bp)
CTCGTCGTGTACTTGCGTGCATCTG
LOC_Os03g46860
Os.54959.1.S1_at--472--491Chr03:26454654..26454678 (25 bp)
ATCTGGCCCGTGATGCATGCATTTG
LOC_Os03g46860
Os.54959.1.S1_at--806--3711Chr03:26454531..26454555 (25 bp)
CTAGCTAGAGCTACGAATGCACTCT
LOC_Os03g46860
Os.54959.1.S1_at--349--5271Chr03:26454517..26454541 (25 bp)
GAATGCACTCTCTATAGCCGAATAA
LOC_Os03g46860
Os.54959.1.S1_at--843--3051Chr03:26454494..26454518 (25 bp)
AATCTTAAGATGTACCGGTTCAACT
LOC_Os03g46860
Target Sequence 
ATGCACCGCCATCATAACCATCATGGCAAAGGTGGAGGACGGGGTGAGCGTCACAGCTGAGGACATTGTAGGGAAGCTAA
ACACTGTGCTCCAGCAAAACAGCAGAAATAGCGCGCGAGAAACAAAAAGCTGACAAACAGCAACAAACGACAGCTGCTAG
CTAGCTTGGCTAGCTACTCAATCAGGCATGTTGCCATTGATTCCAGAACAGTGTAAACACACACTCTCTCTCGATCTGCT
CGTCGTGTACTTGCGTGCATCTGGCCCGTGATGCATGCATTTGCACAAATAAATCTAGCACTGGATACAATTTATCTTAG
TGCAATAAGTTTAAATATATCATATTTAGTACTAGATTTAGTTTTTTGGACGGAGAGAATACTAGCTAGAGCTACGAATG
CACTCTCTATAGCCGAATAATCTTAAGATGTACCGGTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis