Browse Element(s) Details


Os.54961.1.S1_at

Description gb:AK107193.1
DB_XREF= gi:32992402
TID=Os.54961.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A06, full insert sequence.
FL= gb:AK107193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4635011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54961.1.S1_at--135--8471Chr05:26782277..26782301 (25 bp)
TGGCGCCCAACTTTCAAATGCAAGC
LOC_Os05g46350
Os.54961.1.S1_at--1139--3411Chr05:26782366..26782390 (25 bp)
CAGACTTCCCGTGTGATGTGAGCTC
LOC_Os05g46350
Os.54961.1.S1_at--1114--771Chr05:26782381..26782405 (25 bp)
ATGTGAGCTCTGCATCGACATCGTC
LOC_Os05g46350
Os.54961.1.S1_at--102--5911Chr05:26782169..26782511 (25 bp)
GAGCTACAACAGTCCATTCCAGATT
LOC_Os05g46350
Os.54961.1.S1_at--437--3391Chr05:26782518..26782542 (25 bp)
CAGCGATCTGGAGGCATGTCATCTT
LOC_Os05g46350
Os.54961.1.S1_at--776--2431Chr05:26782545..26782569 (25 bp)
AAAAGGGTTGCACTCTCTCCATTAG
LOC_Os05g46350
Os.54961.1.S1_at--155--6291Chr05:26782569..26782593 (25 bp)
GATGTTCAGAGCAACGCCTGTTCAG
LOC_Os05g46350
Os.54961.1.S1_at--755--5211Chr05:26782593..26782617 (25 bp)
GAATTTTCAGTCACCTCCAGGAAGT
LOC_Os05g46350
Os.54961.1.S1_at--844--7171Chr05:26782624..26782648 (25 bp)
GTCTGTCTCTGAAAGGCCGTAGCAT
LOC_Os05g46350
Os.54961.1.S1_at--133--5611Chr05:26782674..26782698 (25 bp)
GACAATCTGTTCTAGCTTGCTGTTC
LOC_Os05g46350
Os.54961.1.S1_at--472--2951Chr05:26782838..26782862 (25 bp)
AATGTCTGAACCTCTTTTTATCCCT
LOC_Os05g46350
Target Sequence 
TGGCGCCCAACTTTCAAATGCAAGCTCAGTTAAGATGAGAGGGAACAGGGTGGCAGCAAAGCCTCCTTCTGTACTCTCAG
CTTCTTCTTCAGACTTCCCGTGTGATGTGAGCTCTGCATCGACATCGTCAGCAACTCCAGCAAGATCCGACGGTGGACAT
GGTGAAGGTCCGAGTTACATGAGCTTGACGAAGTCTGCAAAAGCAAGGCAGAGCTACAACAGTCCATTCCAGATTCAGAG
ACAGCGATCTGGAGGCATGTCATCTTACAAAAGGGTTGCACTCTCTCCATTAGATGTTCAGAGCAACGCCTGTTCAGAAT
TTTCAGTCACCTCCAGGAAGTTAAACAGTCTGTCTCTGAAAGGCCGTAGCATGACAAGGAGCTTGGACAAGGAGAATGAC
AATCTGTTCTAGCTTGCTGTTCTATGGACAAATTAGCTAATTTGCATCTTACATATATATTATCTGATCCGTTGTTAGCA
TTTATACATCCAAGCCAAGCTCAATGCCTCATTGCCTCTATCATGTTTTTTGTATGCACAACTGAGATTAGTCATTAGTT
AAATGTCTGAACCTCTTTTTATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis