Browse Element(s) Details


Os.55110.1.S1_at

Description gb:AK107507.1
DB_XREF= gi:32992716
TID=Os.55110.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E07, full insert sequence.
FL= gb:AK107507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4375011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55110.1.S1_at--191--5951Chr12:27139746..27139770 (25 bp)
GAGCAAGAGCTTCTCCAAGGCCCGG
LOC_Os12g43750
Os.55110.1.S1_at--132--8471Chr12:27139811..27139835 (25 bp)
TGGCCTGCACCAAGAGCAGCAACGG
LOC_Os12g43750
Os.55110.1.S1_at--335--10851Chr12:27139907..27139931 (25 bp)
TTGGGCTCGGGCTCTCTTGCAAGAG
LOC_Os12g43750
Os.55110.1.S1_at--400--6231Chr12:27139965..27139989 (25 bp)
GATGGCCAAACTGCCTGAGGTTCAT
LOC_Os12g43750
Os.55110.1.S1_at--566--1991Chr12:27139974..27139998 (25 bp)
ACTGCCTGAGGTTCATCCTAGGGAT
LOC_Os12g43750
Os.55110.1.S1_at--107--10591Chr12:27140028..27140052 (25 bp)
TTCTCATCTTCTACCAGTCTAAAAA
LOC_Os12g43750
Os.55110.1.S1_at--964--3551Chr12:27140056..27140080 (25 bp)
CATCTTCTGTCTCAATTCTCTTGTT
LOC_Os12g43750
Os.55110.1.S1_at--793--6251Chr12:27140120..27140144 (25 bp)
GATGGTGATCAAGACTTGCTTGCCT
LOC_Os12g43750
Os.55110.1.S1_at--100--4931Chr12:27140137..27140161 (25 bp)
GCTTGCCTGCTTGGTACTTAGGAAT
LOC_Os12g43750
Os.55110.1.S1_at--508--5931Chr12:27140226..27140250 (25 bp)
GAGCATATCATTTGTGCAGGAGATT
LOC_Os12g43750
Os.55110.1.S1_at--18--3251Chr12:27140253..27140277 (25 bp)
CAAGCTCATCTGTCTATAAGTTCAA
LOC_Os12g43750
Target Sequence 
GAGCAAGAGCTTCTCCAAGGCCCGGGCCGTCCGGCCGGAGGACGACCCGTTCTTGGCGGCGTACCTGGCCTGCACCAAGA
GCAGCAACGGCGGCGGCGGTGGCGTTGCGCGGGAGAGCAAGGGGCAGAGGCGGTCCAGATGGGCCGGGCTTGGGCTTGGG
CTTGGGCTCGGGCTCTCTTGCAAGAGCTCAAATGGAGTTGTGGAGGACAGCATGGTGAAGATGGCCAAACTGCCTGAGGT
TCATCCTAGGGATGCTTAGTGATGATGATCCAGTTAAATATATTCTCATCTTCTACCAGTCTAAAAAAATCATCTTCTGT
CTCAATTCTCTTGTTTGTTTTCTTTGATTTGTTTCTTGATTTGGAATTTTTAGTGATGGTGATCAAGACTTGCTTGCCTG
CTTGGTACTTAGGAATTAATTAGAGGTATAGAGGAAGGCACATGTAGATGTGTGCTTGTTTCATCTTTCTTTGCAAAATG
GAGCATATCATTTGTGCAGGAGATTATCAAGCTCATCTGTCTATAAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis