Browse Element(s) Details


Os.55115.1.S1_at

Description gb:AK107512.1
DB_XREF= gi:32992721
TID=Os.55115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E12, full insert sequence.
FL= gb:AK107512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0687011/11Glyoxal oxidase N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein
LOC_Os11g06860Os.24716.1.A1_at9/1111+3363066..3364801expressed protein
LOC_Os11g06870Os.55115.1.S1_at11/1111+3364890..3366775Glyoxal oxidase N-terminus family protein, expressed
LOC_Os11g06880Os.23734.1.A1_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06880OsAffx.18713.1.S1_x_at11/1111+3370847..3373737Long-chain-fatty-acid-CoA ligase 4, putative, expressed
LOC_Os11g06890Os.5512.1.S1_at10/1111+3373934..3376213Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os11g06900Os.14121.1.S1_at11/1111+3378293..3384774Amidase family protein, expressed
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55115.1.S1_at--117--4131Chr11:3365428..3365452 (25 bp)
CGCACGTCGGCTACGTGTTCGACAA
LOC_Os11g06870
Os.55115.1.S1_at--789--3671Chr11:3365412..3365436 (25 bp)
GTTCGACAACGTGACGTACCCGACA
LOC_Os11g06870
Os.55115.1.S1_at--982--6971Chr11:3365397..3365421 (25 bp)
GTACCCGACAGAGCTCAGCCTGGAG
LOC_Os11g06870
Os.55115.1.S1_at--729--8551Chr11:3365377..3365401 (25 bp)
TGGAGGCGTTCCTACCACCATACTT
LOC_Os11g06870
Os.55115.1.S1_at--361--331Chr11:3365358..3365382 (25 bp)
ATACTTCGACGCACGGCTCGACGGC
LOC_Os11g06870
Os.55115.1.S1_at--1006--9331Chr11:3365200..3365224 (25 bp)
TCGCGACGCACTCCTTCGGGATGAA
LOC_Os11g06870
Os.55115.1.S1_at--741--7691Chr11:3365072..3365096 (25 bp)
GGGTACTACCTCTGGTTCGTGCTCC
LOC_Os11g06870
Os.55115.1.S1_at--172--3791Chr11:3365003..3365027 (25 bp)
CTCGGTGCAGCGACGTGATGACGAC
LOC_Os11g06870
Os.55115.1.S1_at--720--1851Chr11:3364977..3365001 (25 bp)
ACGACGTCGACGTGTGAACCAGTCA
LOC_Os11g06870
Os.55115.1.S1_at--769--5751Chr11:3364969..3364993 (25 bp)
GACGTGTGAACCAGTCAACTGCCAC
LOC_Os11g06870
Os.55115.1.S1_at--926--2531Chr11:3364953..3364977 (25 bp)
AACTGCCACGTCTCACTATTTTTCT
LOC_Os11g06870
Target Sequence 
CGCACGTCGGCTACGTGTTCGACAACGTGACGTACCCGACAGAGCTCAGCCTGGAGGCGTTCCTACCACCATACTTCGAC
GCACGGCTCGACGGCGTGCGGCCGCGGCTGGTGGCGGCGCCGTCGGAGGTCGGGTACGGGGAGGCGGCGGCGGTGAGGTT
CGAGGTGCCCGGCGGCGCGGTCTCCGGTGGCCCCGAGGAGGTGCGCGTGGCGGCCGTGGCGCCGGCGTTCGCGACGCACT
CCTTCGGGATGAACCAGAGGGTGGTGTCCCTGGCCGTGGGCACCGTCGCGCAGCTGGCCGCCGGGCTGTACGGGGCGCAG
GTGGCCGCGCCGCCGTCGCCGTCGGTGGCGCCGCCGGGGTACTACCTCTGGTTCGTGCTCCACGCCGGCGTGCCCAGCAC
CGCGGCATGGGTGCGCATGCGGCCGCTCGGTGCAGCGACGTGATGACGACGACGACGTCGACGTGTGAACCAGTCAACTG
CCACGTCTCACTATTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis