Browse Element(s) Details


Os.55321.1.S1_at

Description gb:AK107865.1
DB_XREF= gi:32993074
TID=Os.55321.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C01, full insert sequence.
FL= gb:AK107865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0809011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08050Os.47992.1.S1_at1/118+4560471..4563589retrotransposon protein, putative, unclassified
LOC_Os08g08060Os.5348.1.S1_at11/118+4564674..4574398Pep3/Vps18/deep orange family protein, expressed
LOC_Os08g08070Os.10571.1.S1_at11/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08070OsAffx.7485.1.S1_x_at1/118+4575088..4577145Glucose transporter, putative, expressed
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed
LOC_Os08g08120Os.49576.1.S1_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08120Os.11132.1.S1_s_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08130Os.31233.1.S1_at1/118+4611650..4613757transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55321.1.S1_at--359--5231Chr08:4587368..4587392 (25 bp)
GAATCGTCGAAGCATCAACAGCTAT
LOC_Os08g08090
Os.55321.1.S1_at--897--3391Chr08:4587386..4587410 (25 bp)
CAGCTATAGATCAAGTTCGAGAGGT
LOC_Os08g08090
Os.55321.1.S1_at--1148--5111Chr08:4587428..4587452 (25 bp)
GCAAATTAGCAATGGCGAGCGCGGC
LOC_Os08g08090
Os.55321.1.S1_at--1116--8131Chr08:4587579..4587603 (25 bp)
GGACACCCTGATGCTGCAGGTGCAT
LOC_Os08g08090
Os.55321.1.S1_at--509--691Chr08:4587667..4587691 (25 bp)
ATGAGGAGGGTGATGTACCTCAGCT
LOC_Os08g08090
Os.55321.1.S1_at--227--7571Chr08:4587699..4587723 (25 bp)
GGGCCCTAGCTAAGATTGTCATTTA
LOC_Os08g08090
Os.55321.1.S1_at--480--51Chr08:4587725..4587749 (25 bp)
ATTGATACTATCCTGCTTCTTTTGC
LOC_Os08g08090
Os.55321.1.S1_at--695--3671Chr08:4587743..4587767 (25 bp)
CTTTTGCTGCTTGATTTCGTAGGTA
LOC_Os08g08090
Os.55321.1.S1_at--1103--9711Chr08:4587770..4587794 (25 bp)
TTTGAACTTTTGATTACTTGGGAAT
LOC_Os08g08090
Os.55321.1.S1_at--740--3611Chr08:4587786..4587810 (25 bp)
CTTGGGAATCTGAAGCTGGCTTTGC
LOC_Os08g08090
Os.55321.1.S1_at--1120--3891Chr08:4587801..4587825 (25 bp)
CTGGCTTTGCAAGCATCAAGATGCT
LOC_Os08g08090
Target Sequence 
GAATCGTCGAAGCATCAACAGCTATAGATCAAGTTCGAGAGGTTGATTCAGAGAGGCATTGCAAATTAGCAATGGCGAGC
GCGGCGGCGGCGGTGGCGGCGAAGGCGTGGTGGACGGCGGCGATGAGCGTGGGCGCGGTGGAGGGGCTCAAGGACCAGTC
GGGCCTCTGCCGCTGGAACTACGCGCTCCGGTCGCTGCACGGCGCCGCCATGGACACCCTGATGCTGCAGGTGCATGGCG
GCGCCGGCGCCTCCTCGCCGGCGGCGGCGATGGCGGCGGAGAGGCCGGAGGAGGAGGGGATGAGGAGGGTGATGTACCTC
AGCTGCTGCTGGGGCCCTAGCTAAGATTGTCATTTAGATTGATACTATCCTGCTTCTTTTGCTGCTTGATTTCGTAGGTA
GTTTTGAACTTTTGATTACTTGGGAATCTGAAGCTGGCTTTGCAAGCATCAAGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis