Browse Element(s) Details


Os.55358.1.S1_at

Description gb:AK107934.1
DB_XREF= gi:32993143
TID=Os.55358.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A05, full insert sequence.
FL= gb:AK107934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5668011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55358.1.S1_at--446--7351Chr04:33570767..33570791 (25 bp)
GTGAATGCGATGTGTGATCCCACCC
LOC_Os04g56680
Os.55358.1.S1_at--1060--9051Chr04:33570708..33570732 (25 bp)
TGCATGCGCGCGACCGTTCTTGCCA
LOC_Os04g56680
Os.55358.1.S1_at--1032--8451Chr04:33570631..33570655 (25 bp)
TGGCCATTTGAGAGGAGCTGAGACT
LOC_Os04g56680
Os.55358.1.S1_at--476--5991Chr04:33570521..33570545 (25 bp)
GAGACGGCCAAGTCTAGTCATCCAT
LOC_Os04g56680
Os.55358.1.S1_at--304--10051Chr04:33570507..33570531 (25 bp)
TAGTCATCCATTCCCTTGTCAAATC
LOC_Os04g56680
Os.55358.1.S1_at--736--391Chr04:33570502..33570526 (25 bp)
ATCCATTCCCTTGTCAAATCCGGGA
LOC_Os04g56680
Os.55358.1.S1_at--231--10011Chr04:33570469..33570493 (25 bp)
TAGCACCGGAGATTTTTATTCTTTC
LOC_Os04g56680
Os.55358.1.S1_at--1147--10191Chr04:33570431..33570455 (25 bp)
TATTTTCACTTAATAATTCGCCAGT
LOC_Os04g56680
Os.55358.1.S1_at--1051--7431Chr04:33570408..33570432 (25 bp)
GTGTAAATAACTGTACTACTGCGAT
LOC_Os04g56680
Os.55358.1.S1_at--938--9891Chr04:33570395..33570419 (25 bp)
TACTACTGCGATTATTCTGCCACCA
LOC_Os04g56680
Os.55358.1.S1_at--1009--10571Chr04:33570381..33570405 (25 bp)
TTCTGCCACCATTTCAAGTGAATTG
LOC_Os04g56680
Target Sequence 
GTGAATGCGATGTGTGATCCCACCCCTAGCTAGCCGCTCCGCTCGCCATTGCGCGTGCGTGCATGCGCGCGACCGTTCTT
GCCACCATTTTTTTTTTCTCTTCTCTTCTTGTCCTCTTTTTTCCCCTCTCCCTCCATGGCCATTTGAGAGGAGCTGAGAC
TCGCCGGAGCAAGAGAAAGAGAGAGAAATCGGCGACCGGCCGGCGGTGGCGGTGAAGTGAGATGGCTGAGAAAGTCTTAG
GATTTTGAGACGGCCAAGTCTAGTCATCCATTCCCTTGTCAAATCCGGGAAAATTATTTAGCACCGGAGATTTTTATTCT
TTCTTCTTCTTCTTCTTATTTTCACTTAATAATTCGCCAGTGTAAATAACTGTACTACTGCGATTATTCTGCCACCATTT
CAAGTGAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis