Browse Element(s) Details


Os.55360.1.S1_at

Description gb:AK107938.1
DB_XREF= gi:32993147
TID=Os.55360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A10, full insert sequence.
FL= gb:AK107938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5071011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55360.1.S1_at--377--3871Chr02:30968858..30968882 (25 bp)
CTGATCGATCGATTACTCGAGGCGA
LOC_Os02g50710
Os.55360.1.S1_at--1111--131Chr02:30968847..30968871 (25 bp)
ATTACTCGAGGCGATACCGCGTTAG
LOC_Os02g50710
Os.55360.1.S1_at--742--4631Chr02:30968837..30968861 (25 bp)
GCGATACCGCGTTAGATCGATCGAT
LOC_Os02g50710
Os.55360.1.S1_at--597--511Chr02:30968814..30968838 (25 bp)
ATCGATCTTCGTTTAGTTTCTGGAT
LOC_Os02g50710
Os.55360.1.S1_at--1012--10331Chr02:30968803..30968827 (25 bp)
TTTAGTTTCTGGATGGAGCGGAGCA
LOC_Os02g50710
Os.55360.1.S1_at--766--3951Chr02:30968785..30968809 (25 bp)
CGGAGCAGCTCGTTCGGCACGTCGT
LOC_Os02g50710
Os.55360.1.S1_at--822--531Chr02:30968527..30968551 (25 bp)
ATCGCTGGGTACTAGGCTGTTTTTA
LOC_Os02g50710
Os.55360.1.S1_at--281--8331Chr02:30968513..30968537 (25 bp)
GGCTGTTTTTACTGTCAGACCAACG
LOC_Os02g50710
Os.55360.1.S1_at--199--6951Chr02:30968470..30968494 (25 bp)
GTAGACGCAGTTTTATTCGTAGGGT
LOC_Os02g50710
Os.55360.1.S1_at--1042--91Chr02:30968456..30968480 (25 bp)
ATTCGTAGGGTTGTGCTTATGCATG
LOC_Os02g50710
Os.55360.1.S1_at--745--10791Chr02:30968387..30968411 (25 bp)
TTGTACAGTAACTTTCTCCGTTTCA
LOC_Os02g50710
Target Sequence 
CTGATCGATCGATTACTCGAGGCGATACCGCGTTAGATCGATCGATCGATCTTCGTTTAGTTTCTGGATGGAGCGGAGCA
GCTCGTTCGGCACGTCGTGGGCCGACCAGTGGGACTATGGCGGCGACCCGAGCCCGCGGGCGGCGGCGCGGCGGGACGGC
CACGGCGGCGGCAAGAAGCAGGGCGGCGTGGAGAAGACCAAGGCGGCGGCGGCGACGGGGCTGAGGAAGGTGAAGGAGGG
CACGGCGCACGGGTTCCAGTGGATCAAGGACAAATGCCAGAAGAAGAACGCCGGCGGCGGCAAGAAGCAGCAGGCTGACG
AGGAATCGGGGATCGCTGGGTACTAGGCTGTTTTTACTGTCAGACCAACGATTTGGTTGGTTGATTAGGTAGACGCAGTT
TTATTCGTAGGGTTGTGCTTATGCATGTGTGTATAATAATAGTTGGGGCATGCCAGCTTATTTGCTGGATTTTGTACAGT
AACTTTCTCCGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis