Browse Element(s) Details


Os.55372.1.S1_at

Description gb:AK107964.1
DB_XREF= gi:32993173
TID=Os.55372.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C12, full insert sequence.
FL= gb:AK107964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g428841/115-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42900Os.55055.1.S1_at11/1112+26629559..26631216transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0005829cellular_componentcytosol
GO:0003871molecular_function5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55372.1.S1_at--897--4151Chr02:1034228..1034252 (25 bp)
CCCAACCAAAATTGATTTGACCATT
NONE
Os.55372.1.S1_at--450--8931Chr02:1034245..1034269 (25 bp)
TGACCATTTTTTTCCCTCAGGAACA
NONE
Os.55372.1.S1_at--936--8931Chr02:1034256..1034280 (25 bp)
TTCCCTCAGGAACACCAAACCAAAG
NONE
Os.55372.1.S1_at--676--3471Chr02:1034262..1034286 (25 bp)
CAGGAACACCAAACCAAAGGCAGAA
NONE
Os.55372.1.S1_at--240--3231Chr02:1034313..1034337 (25 bp)
CAAGTTGGATAGTGGTAACTGATAC
NONE
Os.55372.1.S1_at--927--7492Chr12:26621137..26621345 (25 bp)
GTGGTAACTGATACATATTTTTGTA
LOC_Os12g42884
Os.55372.1.S1_at--452--6051Chr02:1034360..1034384 (25 bp)
GAGATTTAGCTAGAGATCACTGATG
NONE
Os.55372.1.S1_at--1038--6313Chr04:33569386..33569405 (20 bp)
GATGAAGAATACTGAATACACACAC
NONE
Os.55372.1.S1_at--14--3311Chr02:1034399..1034423 (25 bp)
CACACACAGTGTATATAGCGTCAAA
NONE
Os.55372.1.S1_at--904--9991Chr02:1034414..1034438 (25 bp)
TAGCGTCAAAATTCATTAATTGCAT
NONE
Os.55372.1.S1_at--308--3171Chr02:1034431..1034455 (25 bp)
AATTGCATGATCAGTTGTTCGTTTC
NONE
Target Sequence 
CCCAACCAAAATTGATTTGACCATTTTTTTCCCTCAGGAACACCAAACCAAAGGCAGAAAAGGAATAGAAAGAAAGAAGA
GAATACAAGTTGGATAGTGGTAACTGATACATATTTTTGTACAAATTTCATAGAGATTTAGCTAGAGATCACTGATGAAG
AATACTGAATACACACACAGTGTATATAGCGTCAAAATTCATTAATTGCATGATCAGTTGTTCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis