Browse Element(s) Details


Os.55374.1.S1_s_at

Description gb:AK107967.1
DB_XREF= gi:32993176
TID=Os.55374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D03, full insert sequence.
FL= gb:AK107967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3032011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30310Os.10838.1.S1_a_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.49674.1.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.10838.3.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.50454.1.S2_at5/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30320Os.27642.1.S1_at11/112+18053162..18054105expressed protein
LOC_Os02g30320Os.55374.1.S1_s_at11/112+18053162..18054105expressed protein
LOC_Os02g30330OsAffx.12287.1.S1_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330OsAffx.12287.1.S1_s_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.54560.1.S1_x_at4/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.10263.1.S1_at2/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.45902.1.A1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.51841.1.S1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30340NANA2+18066311..18068836retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g30350OsAffx.7916.1.S1_at1/112+18069559..18072271retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g30360NANA2+18076638..18078353transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30370NANA2+18078705..18082394transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55374.1.S1_s_at--1130--3311Chr02:18053313..18053337 (25 bp)
CACTAGTACGATGGTTGGGCCGATC
LOC_Os02g30320
Os.55374.1.S1_s_at--801--8571Chr02:18053324..18053348 (25 bp)
TGGTTGGGCCGATCGTGATAGCGTC
LOC_Os02g30320
Os.55374.1.S1_s_at--417--871Chr02:18053380..18053404 (25 bp)
ATGGCGAACCGGACCATGGGCGGCG
LOC_Os02g30320
Os.55374.1.S1_s_at--1058--7211Chr02:18053485..18053509 (25 bp)
GTCGACTGCCTCTGCAACCGCTGGT
LOC_Os02g30320
Os.55374.1.S1_s_at--998--9011Chr02:18053497..18053521 (25 bp)
TGCAACCGCTGGTCCGACGGCGACT
LOC_Os02g30320
Os.55374.1.S1_s_at--1019--5691Chr02:18053674..18053698 (25 bp)
GACTACAGCTGATGATAGCCAAGCC
LOC_Os02g30320
Os.55374.1.S1_s_at--818--6471Chr02:18053687..18053711 (25 bp)
GATAGCCAAGCCAAGAAGACAAAAA
LOC_Os02g30320
Os.55374.1.S1_s_at--147--7271Chr02:18053729..18053753 (25 bp)
GTCCATATTCATGTGTGGATCTTGA
LOC_Os02g30320
Os.55374.1.S1_s_at--826--10191Chr02:18053775..18053799 (25 bp)
TATATGTATCGATCTTCATCGTCGA
LOC_Os02g30320
Os.55374.1.S1_s_at--723--7211Chr02:18053795..18053819 (25 bp)
GTCGATACTGCTTGCTCATCTACAA
LOC_Os02g30320
Os.55374.1.S1_s_at--1020--1971Chr02:18053801..18053825 (25 bp)
ACTGCTTGCTCATCTACAAGATCGA
LOC_Os02g30320
Target Sequence 
CACTAGTACGATGGTTGGGCCGATCGTGATAGCGTCGGCGGGGCTGGGGATGCTGGCGGGGGTGGCCATGGCGAACCGGA
CCATGGGCGGCGGCGGCGACGGGCGGCAGCTGCCGGCGGCGTCGAGGTGGGACGCGCGGCCACGGTGCGCCACGTGCGGC
GGCAGCGGCCGCGTCGACTGCCTCTGCAACCGCTGGTCCGACGGCGACTCCGGCTGCCGCACCTGCGCCGGCTCCGGCCG
GATGCCCTGCCGCAGCTGCGGCGGCTCCGGCACCGGCAGGCCGCTCCCCGCCCGCCTCATCGCCCGCGGCCACCACCACC
ACCACAACCCGCCGCCGTCGTCAGCGCCGGGACGAGGCGGTGACTACAGCTGATGATAGCCAAGCCAAGAAGACAAAAAA
GTATATATATGTACATGTCCATATTCATGTGTGGATCTTGATTATATATATACATATATGTATATATGTATCGATCTTCA
TCGTCGATACTGCTTGCTCATCTACAAGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55374.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis