Browse Element(s) Details


Os.55396.1.S1_at

Description gb:AK108003.1
DB_XREF= gi:32993212
TID=Os.55396.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G08, full insert sequence.
FL= gb:AK108003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g407504/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40720OsAffx.32123.1.S1_at11/1112+25173956..25177221hypothetical protein
LOC_Os12g40720OsAffx.28164.2.S1_at1/1112+25173956..25177221hypothetical protein
LOC_Os12g40730OsAffx.20057.1.S1_at9/1112+25181450..25184940Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40750Os.55396.1.S1_at4/1112+25199689..25200446pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g40760Os.57207.1.S1_s_at11/1112+25201267..25202222expressed protein
LOC_Os12g40770Os.18059.1.S1_at10/1112+25202409..25207079TPR Domain containing protein, expressed
LOC_Os12g40780Os.51731.1.S1_at11/1112+25208796..25213131TPR Domain containing protein, expressed
LOC_Os12g40790Os.26794.1.S2_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40790Os.26794.1.S1_at11/1112+25214132..25220338zinc finger family protein, putative, expressed
LOC_Os12g40800OsAffx.32124.1.S1_at9/1112+25223568..25224627hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55396.1.S1_at--439--4831Chr12:25200538..25200562 (25 bp)
GCTCACCTAACTCCAACAAGAACAA
NONE
Os.55396.1.S1_at--576--10471Chr12:25200502..25200526 (25 bp)
TTAACAGGAGTAGAGTACACTTTGC
NONE
Os.55396.1.S1_at--500--7031Chr12:25200488..25200512 (25 bp)
GTACACTTTGCATTAGACATCCACC
NONE
Os.55396.1.S1_at--732--10271Chr12:25200482..25200506 (25 bp)
TTTGCATTAGACATCCACCAAGAAG
NONE
Os.55396.1.S1_at--443--3531Chr12:25200471..25200495 (25 bp)
CATCCACCAAGAAGAAACGAGCTCG
NONE
Os.55396.1.S1_at--98--2751NONE
AAGAAACGAGCTCGATCGCCCTGAA
NONE
Os.55396.1.S1_at--273--9391NONE
TCGATCGCCCTGAAGCCATCAATGG
NONE
Os.55396.1.S1_at--92--8951Chr12:25199833..25199857 (25 bp)
TGACGTGGCATGACATCATCATCCC
LOC_Os12g40750
Os.55396.1.S1_at--538--531Chr12:25199813..25199837 (25 bp)
ATCCCATCGATGCATGACGTGGCAC
LOC_Os12g40750
Os.55396.1.S1_at--573--4991Chr12:25199802..25199826 (25 bp)
GCATGACGTGGCACTCTTTTTTCTT
LOC_Os12g40750
Os.55396.1.S1_at--947--6851Chr12:25199721..25199745 (25 bp)
GTTTGATGTAATGTAAGCTGGTGAC
LOC_Os12g40750
Target Sequence 
GCTCACCTAACTCCAACAAGAACAACAAAGAAGAAATTAACAGGAGTAGAGTACACTTTGCATTAGACATCCACCAAGAA
GAAACGAGCTCGATCGCCCTGAAGCCATCAATGGCGATGGGGTCCTCCTCATTACTACGCGGCGGTGCGGCTGATGCGCG
GGTACGCGGCGGCGCGGAGCTGGGAGGCGGCGAGGTCGCTGCTGTGGCTGTCGGGGCAGGCCGGGATGGGGTGCGCGGCG
GCGCTCGACTCGCCGGCGCCGGGGATGGACAGGGCCAACGAGGATTTCAGCCGGCTCACCACCATGGCCACCGCGCTGCT
CAACAGCGTCGCCGCCACCAGCGGCTGAGCTCTCCGCTAGCTCCGGCCACGGCTGACGTGGCATGACATCATCATCCCAT
CGATGCATGACGTGGCACTCTTTTTTCTTTCTCTTTTTTTTCTTTTGCCTTTTTTTTTATGGTAGTAGAGATGTTGTGGG
AGTTGTTTGATGTAATGTAAGCTGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis