Browse Element(s) Details


Os.55444.1.S1_at

Description gb:AK108103.1
DB_XREF= gi:32993312
TID=Os.55444.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B03, full insert sequence.
FL= gb:AK108103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4727011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47210NANA3+26671205..26671801expressed protein
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein
LOC_Os03g47246OsAffx.25598.1.S1_x_at7/113+26685956..26686324ACT domain-containing protein, putative
LOC_Os03g47252OsAffx.25598.1.S1_x_at4/113+26687320..26688208hypothetical protein
LOC_Os03g47260NANA3+26689835..26690760expressed protein
LOC_Os03g47270Os.55444.1.S1_at11/113+26695971..26696832expressed protein
LOC_Os03g47280Os.56080.1.S1_at10/113+26701207..26701873VQ motif family protein, expressed
LOC_Os03g47290OsAffx.3540.1.S1_at11/113+26703572..26704006hypothetical protein
LOC_Os03g47300NANA3+26704929..26705603hypothetical protein
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55444.1.S1_at--128--1411Chr03:26696389..26696413 (25 bp)
AAGAAGGTGACGTGCCCCAAGAAGT
LOC_Os03g47270
Os.55444.1.S1_at--803--9031Chr03:26696473..26696497 (25 bp)
TGCACCATCGACTGCAAGACCAAGT
LOC_Os03g47270
Os.55444.1.S1_at--958--2851Chr03:26696494..26696518 (25 bp)
AAGTGCACCGCCTACTGCTGAATCT
LOC_Os03g47270
Os.55444.1.S1_at--241--1971Chr03:26696507..26696531 (25 bp)
ACTGCTGAATCTCCCAAACGCCGAG
LOC_Os03g47270
Os.55444.1.S1_at--590--8231Chr03:26696549..26696573 (25 bp)
GGCACCACGGATTCACTGGGTTCTG
LOC_Os03g47270
Os.55444.1.S1_at--954--3331Chr03:26696562..26696586 (25 bp)
CACTGGGTTCTGTGAAGAGTACAAG
LOC_Os03g47270
Os.55444.1.S1_at--500--6331Chr03:26696719..26696743 (25 bp)
GATGCATGCAGTGTGTTCTTGTTTA
LOC_Os03g47270
Os.55444.1.S1_at--280--6731Chr03:26696733..26696757 (25 bp)
GTTCTTGTTTAAGTTCCTTTCTCTG
LOC_Os03g47270
Os.55444.1.S1_at--942--10671Chr03:26696746..26696770 (25 bp)
TTCCTTTCTCTGTTTATTAGCTGGT
LOC_Os03g47270
Os.55444.1.S1_at--1151--9451Chr03:26696754..26696778 (25 bp)
TCTGTTTATTAGCTGGTTGTGGTAC
LOC_Os03g47270
Os.55444.1.S1_at--1014--7471Chr03:26696783..26696807 (25 bp)
GTGTGGTATAGTACATCGCCATGAA
LOC_Os03g47270
Target Sequence 
AAGAAGGTGACGTGCCCCAAGAAGTGNTTNTNGNTCCTACAGNAGCTCCGGCAAGGGCTACGGCGGCGGGGGCGGCGGCG
GCGGCTGCACCATCGACTGCAAGACCAAGTGCACCGCCTACTGCTGAATCTCCCAAACGCCGAGNTCGATATATCGGCGC
CGGCACCACGGATTCACTGGGTTCTGTGAAGAGTACAAGTAGGGTGTGTGATGAAGAGGATATATATATATATATATATA
TATATATATATATATATATATATATATATGTGCGGNTAAAAGTTTGAGGNGATGCTTTCTNGTGTTTAATTAATTAGCTA
TAATCAGATCAGATGCATGCAGTGTGTTCTTGTTTAAGTTCCTTTCTCTGTTTATTAGCTGGTTGTGGTACGTGTGTGTG
GTATAGTACATCGCCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis