Browse Element(s) Details


Os.55450.1.S1_x_at

Description gb:AK108113.1
DB_XREF= gi:32993322
TID=Os.55450.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C02, full insert sequence.
FL= gb:AK108113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5047011/11expressed protein
LOC_Os07g436501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50420NANA2+30782962..30783240hypothetical protein
LOC_Os02g50430OsAffx.12577.1.S1_at11/112+30784625..30785446hypothetical protein
LOC_Os02g50440NANA2+30787516..30790659hypothetical protein
LOC_Os02g50450OsAffx.24811.1.S1_at11/112+30793406..30796666hypothetical protein
LOC_Os02g50460OsAffx.24812.1.S1_s_at11/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50460Os.36435.2.S1_x_at1/112+30800132..30801657U-box domain containing protein, expressed
LOC_Os02g50470Os.55450.1.S1_x_at11/112+30807616..30808850expressed protein
LOC_Os02g50470Os.55450.1.S1_at11/112+30807616..30808850expressed protein
LOC_Os02g50470OsAffx.28148.1.S1_x_at10/112+30807616..30808850expressed protein
LOC_Os02g50480Os.51036.1.A1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50480OsAffx.12578.1.S1_at11/112+30817676..30823570histidine kinase 1, putative, expressed
LOC_Os02g50490Os.17509.1.S1_at11/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.15414.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g50490OsAffx.22010.1.S1_x_at3/112+30833330..30836720Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55450.1.S1_x_at--672--9312Chr10:15115874..15115898 (25 bp)
TCCCGGATGTAGGACTGCAGCTCGG
NONE
Os.55450.1.S1_x_at--648--292Chr06:28733561..28733585 (25 bp)
ATAGAAGCCGGAACCCTCGTGCGGA
NONE
Os.55450.1.S1_x_at--786--8112Chr06:28733393..28733643 (25 bp)
GGACGTGGCGCGCACGGCATGGGCG
NONE
Os.55450.1.S1_x_at--80--6232Chr06:28733651..28733675 (25 bp)
GAGGCCAAGATCTGCTGCCGCACGA
NONE
Os.55450.1.S1_x_at--75--4573Chr10:15116318..15116342 (25 bp)
GCGCCCGCGGAGTCAGAAGACGCAA
NONE
Os.55450.1.S1_x_at--992--74714Chr11:6402352..6402375 (24 bp)
GTGGGCCCACCATATTTATTTTTTG
NONE
Os.55450.1.S1_x_at--829--175Chr10:15116394..15116418 (25 bp)
ATTTATTTTTTGTCGCTGACATGTA
NONE
Os.55450.1.S1_x_at--65--10412Chr10:15116401..15116725 (25 bp)
TTTTGTCGCTGACATGTAGGTCCAT
NONE
Os.55450.1.S1_x_at--669--7231Chr02:30808788..30808812 (25 bp)
GTCGCTGACATGTAGGTCCATGTGG
LOC_Os02g50470
Os.55450.1.S1_x_at--685--11Chr02:30808797..30808821 (25 bp)
ATGTAGGTCCATGTGGGCCCCCTAT
LOC_Os02g50470
Os.55450.1.S1_x_at--674--2451Chr02:30808825..30808849 (25 bp)
AAAATTATTCTTTTGTGTGCTGCTG
LOC_Os02g50470
Target Sequence 
TCCCGGATGTAGGACTGCAGCTCGGCGAGGAAGTCGCCGGTCCGCGTGAAGGCGAGCAGCGCGGCGGCGCCCTGGAAGAT
GGCGATGAGGACGGCGGGAGCGGGAGCAGCGGAGGACGACGAGGACGGAGGTAGCGGCCGCCGCGGCGCTTGCGGTGGAG
GACGGCGAGGACATAGAAGCCGGAACCCTCGTGCGGACGGCGGCGGTGAGGTCGGTCCCCTCCTAGAGGGGGACGTGGCG
CGCACGGCATGGGCGCGCGAGCGAGGCCAAGATCTGCTGCCGCACGAGGCCCACCCGGTCGGCGACGACGACCCGCAGCT
TGCGGACGCCGAGGAAGGGCTGTACGGTGACGGTGCCGAGGTCGACGGTTTGGTCGCCGTCGACGAAGACGACGGGCAGC
ACGGCCTTGGGCGGCGGCGGCCGCGTGCTGGTGGTTGAGCGGCGCGGCGCGCCCGCGGAGTCAGAAGACGCAACGAGGAA
GAAGAGGGAGAAAGGGAATGATATGTGGGGCCCACGTGGGCCCACCATATTTATTTTTTGTCGCTGACATGTAGGTCCAT
GTGGGCCCCCTATTTTAAAATTATTCTTTTGTGTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55450.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis