Browse Element(s) Details


Os.55512.1.S1_at

Description gb:AK108232.1
DB_XREF= gi:32993441
TID=Os.55512.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G04, full insert sequence.
FL= gb:AK108232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2570011/11Tropinone reductase homolog At1g07440, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25650OsAffx.23409.1.S1_s_at1/1111+14135634..14138001hypothetical protein
LOC_Os11g25650Os.29923.1.S1_at1/1111+14135634..14138001hypothetical protein
LOC_Os11g25660NANA11+14140111..14143281hypothetical protein
LOC_Os11g25670OsAffx.22699.1.S1_x_at2/1111+14143601..14149196retrotransposon protein, putative, unclassified
LOC_Os11g25670OsAffx.8279.1.S1_at1/1111+14143601..14149196retrotransposon protein, putative, unclassified
LOC_Os11g25680NANA11+14149751..14150554hypothetical protein
LOC_Os11g25690Os.46012.2.S1_x_at8/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690Os.46012.3.S1_x_at6/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690Os.27088.1.A1_x_at4/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25690OsAffx.8801.1.S1_at1/1111+14151656..14157029retrotransposon protein, putative, unclassified
LOC_Os11g25700Os.55512.1.S1_at11/1111+14160539..14163697Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25710NANA11+14164808..14165638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25720OsAffx.12157.1.S1_at1/1111+14169398..14170956retrotransposon protein, putative, unclassified
LOC_Os11g25730Os.47905.1.S1_at10/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25730OsAffx.30264.1.S1_at1/1111+14172615..14175123UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25740NANA11+14177487..14177930hypothetical protein
LOC_Os11g25750OsAffx.19022.2.S1_s_at11/1111+14184240..14187095Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55512.1.S1_at--433--10131Chr11:14161307..14161327 (21 bp)
TATCTACTCGGCTGCCAAAGGAGCA
LOC_Os11g25700
Os.55512.1.S1_at--1157--791Chr11:14161945..14161969 (25 bp)
ATGGGATCAGAGTCAATTCCGTTGC
LOC_Os11g25700
Os.55512.1.S1_at--743--1871Chr11:14163261..14163285 (25 bp)
ACGATTTCGCACAGGTTGAGTTCAA
LOC_Os11g25700
Os.55512.1.S1_at--692--10751Chr11:14163276..14163300 (25 bp)
TTGAGTTCAACCGTCTTCCTTTGGG
LOC_Os11g25700
Os.55512.1.S1_at--575--10231Chr11:14163295..14163319 (25 bp)
TTTGGGCCGTCTCGGTAAACCTGAG
LOC_Os11g25700
Os.55512.1.S1_at--559--2371Chr11:14163311..14163335 (25 bp)
AAACCTGAGGACATCTCGTCGTTGG
LOC_Os11g25700
Os.55512.1.S1_at--848--3331Chr11:14163370..14163394 (25 bp)
CACTGGCCAGATTATATGCGTCGAT
LOC_Os11g25700
Os.55512.1.S1_at--1154--7551Chr11:14163397..14163421 (25 bp)
GGGCCGTATGCTTTCTTAATAAACT
LOC_Os11g25700
Os.55512.1.S1_at--632--5271Chr11:14163491..14163515 (25 bp)
GAATGAAATCTTTGTGTGCCCGTGT
LOC_Os11g25700
Os.55512.1.S1_at--190--2651Chr11:14163519..14163543 (25 bp)
AACCACACACAACAGGCTAGCTAGT
LOC_Os11g25700
Os.55512.1.S1_at--623--10011Chr11:14163536..14163560 (25 bp)
TAGCTAGTCTTCTCTGCATGCGTAG
LOC_Os11g25700
Target Sequence 
TATCTACTCGGCTGCCAAAGGAGCAATGAACCAAGTCACAAGGAACCTGGCTTGTGAGTGGGCGAGCGATGGGATCAGAG
TCAATTCCGTTGCACCGGGCTACATCCAGACTCCACTCCTAACTGCCTTCGTGGCCGGCAACGATTTCGCACAGGTTGAG
TTCAACCGTCTTCCTTTGGGCCGTCTCGGTAAACCTGAGGACATCTCGTCGTTGGTGGCGTTCCTGTGCATGCCTGCGGC
CTCCTACATCACTGGCCAGATTATATGCGTCGATGGGGGCCGTATGCTTTCTTAATAAACTCTACATATACAAAATAAAG
ATATATCATGTATCATAATATATTCTACTGAATTGGGAGACTTCCAAGAAGAATGAAATCTTTGTGTGCCCGTGTACCAA
CCACACACAACAGGCTAGCTAGTCTTCTCTGCATGCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis