Browse Element(s) Details


Os.55514.1.S1_at

Description gb:AK108234.1
DB_XREF= gi:32993443
TID=Os.55514.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G06, full insert sequence.
FL= gb:AK108234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4249011/11DC1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42470Os.14318.1.S1_at10/118+26708223..26710424bHLH transcription factor GBOF-1, putative, expressed
LOC_Os08g42480OsAffx.17476.1.S1_x_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480OsAffx.17476.1.S1_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480Os.51366.1.S1_at1/118+26717621..26720200hypothetical protein
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55514.1.S1_at--51--5851Chr08:26729233..26729257 (25 bp)
GACCACCAGCTTGAATTAATACGTA
LOC_Os08g42490
Os.55514.1.S1_at--995--1871Chr08:26729213..26729237 (25 bp)
ACGTATTCATCATCTCTTAATTGCT
LOC_Os08g42490
Os.55514.1.S1_at--618--9611Chr08:26729204..26729228 (25 bp)
TCATCTCTTAATTGCTCTTCTTCTT
LOC_Os08g42490
Os.55514.1.S1_at--861--9091Chr08:26729192..26729216 (25 bp)
TGCTCTTCTTCTTGTGCCGTGCAAA
LOC_Os08g42490
Os.55514.1.S1_at--47--2791Chr08:26729159..26729183 (25 bp)
AAGAGATTTTTGCTTCGATCTAGCA
LOC_Os08g42490
Os.55514.1.S1_at--1134--2312Chr08:26729133..26729157 (25 bp)
AAAGTATCTCGATGTATCGATACTA
LOC_Os08g42490
Os.55514.1.S1_at--327--6911Chr08:26729120..26729144 (25 bp)
GTATCGATACTAAATCATTTCTGAT
LOC_Os08g42490
Os.55514.1.S1_at--715--511Chr08:26729097..26729121 (25 bp)
ATCGTTGGATCTAACTAGGCGGGAT
LOC_Os08g42490
Os.55514.1.S1_at--784--2511Chr08:26729085..26729109 (25 bp)
AACTAGGCGGGATGGATGTTAGATC
LOC_Os08g42490
Os.55514.1.S1_at--808--10051Chr08:26729042..26729066 (25 bp)
TAGTACCGTGAGATGCCGGTAGCTT
LOC_Os08g42490
Os.55514.1.S1_at--156--591Chr08:26729030..26729054 (25 bp)
ATGCCGGTAGCTTGAGATATTTTTG
LOC_Os08g42490
Target Sequence 
GACCACCAGCTTGAATTAATACGTATTCATCATCTCTTAATTGCTCTTCTTCTTGTGCCGTGCAAATAATGTATAAGAGA
TTTTTGCTTCGATCTAGCAAAAAGTATCTCGATGTATCGATACTAAATCATTTCTGATCGTTGGATCTAACTAGGCGGGA
TGGATGTTAGATCCAACGATCGGAAACGATTTAGTACCGTGAGATGCCGGTAGCTTGAGATATTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis