Browse Element(s) Details


Os.55531.1.S1_at

Description gb:AK108264.1
DB_XREF= gi:32993473
TID=Os.55531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B08, full insert sequence.
FL= gb:AK108264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3242010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32370OsAffx.31869.4.S1_x_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.4.S1_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_x_at6/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_s_at4/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.5.S1_x_at2/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32390OsAffx.13157.1.S1_at11/113+18482987..18484302hypothetical protein
LOC_Os03g32400Os.57162.1.S1_x_at11/113+18485450..18486362expressed protein
LOC_Os03g32400Os.57162.1.S1_at11/113+18485450..18486362expressed protein
LOC_Os03g32410OsAffx.13158.1.S1_at8/113+18490260..18492227hypothetical protein
LOC_Os03g32420Os.55531.1.S1_at10/113+18493855..18494861expressed protein
LOC_Os03g32430OsAffx.3389.1.S1_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32430OsAffx.3389.1.S1_x_at11/113+18499135..18500005hypothetical protein
LOC_Os03g32440NANA3+18504330..18507343expressed protein
LOC_Os03g32450NANA3+18510410..18510868hypothetical protein
LOC_Os03g32460OsAffx.25340.1.S1_at11/113+18514036..18516708expressed protein
LOC_Os03g32460OsAffx.29269.1.S1_at1/113+18514036..18516708expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55531.1.S1_at--620--971Chr03:18494511..18494535 (25 bp)
AGGAGGGAGCCGCAGCGCGAGGTTC
LOC_Os03g32420
Os.55531.1.S1_at--185--10631Chr03:18494533..18494557 (25 bp)
TTCGAGCAGCCGAGAGCCGCCGCTA
LOC_Os03g32420
Os.55531.1.S1_at--1032--2332Chr03:18494577..18494601 (25 bp)
AAAGAATCTCCCGTTGGGCTTCCTG
LOC_Os03g32420
Os.55531.1.S1_at--860--9271Chr03:18494597..18494621 (25 bp)
TCCTGGGCGCCGGTCTTGTGTGCAA
LOC_Os03g32420
Os.55531.1.S1_at--492--4491Chr03:18494605..18494629 (25 bp)
GCCGGTCTTGTGTGCAACTGCTCGC
LOC_Os03g32420
Os.55531.1.S1_at--578--6071Chr03:18494739..18494763 (25 bp)
GAGTAACACTATTCGTCGGAGTAGA
LOC_Os03g32420
Os.55531.1.S1_at--550--7191Chr03:18494753..18494777 (25 bp)
GTCGGAGTAGAATCCTTGAGTGGTT
LOC_Os03g32420
Os.55531.1.S1_at--169--6131Chr03:18494770..18494794 (25 bp)
GAGTGGTTAGAGGAACTCTCCATTT
LOC_Os03g32420
Os.55531.1.S1_at--642--10031Chr03:18494777..18494801 (25 bp)
TAGAGGAACTCTCCATTTCCAAGGA
LOC_Os03g32420
Os.55531.1.S1_at--38--8171NONE
GGAAAAACCGCTACTTAGACATAAT
NONE
Os.55531.1.S1_at--175--9291Chr03:18494836..18494860 (25 bp)
TCCGTTCAATCCCAATTTTTTCATT
LOC_Os03g32420
Target Sequence 
AGGAGGGAGCCGCAGCGCGAGGTTCGAGCAGCCGAGAGCCGCCGCTAAGGATGCGGTGGCATGGGAAAAGAATCTCCCGT
TGGGCTTCCTGGGCGCCGGTCTTGTGTGCAACTGCTCGCCGGACGCCGTCGAGCCTGTCGGCTCGGCGGAGGCCGCGGCG
GCGGCGGCGGCGAGGAGGCGGAGGAGGAAAGTAGCAGAGAAGAACACGGGAGAGGTGAAGAGTGGACAGAGTAACACTAT
TCGTCGGAGTAGAATCCTTGAGTGGTTAGAGGAACTCTCCATTTCCAAGGAAAAACCGCTACTTAGACATAATTATTTTG
TTTTTCCGTTCAATCCCAATTTTTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis