Browse Element(s) Details


Os.55564.1.S1_at

Description gb:AK108324.1
DB_XREF= gi:32993533
TID=Os.55564.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H05, full insert sequence.
FL= gb:AK108324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0641011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55564.1.S1_at--688--8471Chr02:3206039..3206063 (25 bp)
TGGCGCACCACGTGCACCGGCTGTG
LOC_Os02g06410
Os.55564.1.S1_at--1132--7631Chr02:3206153..3206177 (25 bp)
GGGAGCTCCACGACATCCTAAGCTA
LOC_Os02g06410
Os.55564.1.S1_at--444--5671Chr02:3206164..3206188 (25 bp)
GACATCCTAAGCTAGACAACTTTTT
LOC_Os02g06410
Os.55564.1.S1_at--1135--5511Chr02:3206211..3206235 (25 bp)
GAAAAGTATGTATCTGCACTGCAAA
LOC_Os02g06410
Os.55564.1.S1_at--230--8771Chr02:3206219..3206243 (25 bp)
TGTATCTGCACTGCAAACTGCCATG
LOC_Os02g06410
Os.55564.1.S1_at--930--8991Chr02:3206230..3206254 (25 bp)
TGCAAACTGCCATGGTCGGCACAAT
LOC_Os02g06410
Os.55564.1.S1_at--293--4431Chr02:3206238..3206262 (25 bp)
GCCATGGTCGGCACAATGTGGTTGT
LOC_Os02g06410
Os.55564.1.S1_at--169--3211Chr02:3206251..3206275 (25 bp)
CAATGTGGTTGTTTTCGTGTTGTGA
LOC_Os02g06410
Os.55564.1.S1_at--562--9411Chr02:3206265..3206289 (25 bp)
TCGTGTTGTGAATTTTGCTTTGTTT
LOC_Os02g06410
Os.55564.1.S1_at--1153--9071Chr02:3206280..3206304 (25 bp)
TGCTTTGTTTCCATCAACATCAATG
LOC_Os02g06410
Os.55564.1.S1_at--298--3211Chr02:3206300..3206324 (25 bp)
CAATGGATCGGTTTGGGCTGGTTTA
LOC_Os02g06410
Target Sequence 
TGGCGCACCACGTGCACCGGCTGTGGGTGGTCGACGAGGAGGGGTTGCTCGCCGGGGTGGTGTCGCTGACCGACGTGCTC
CGCGTCGTCAGGGAGGCCGCCATCGGCGAGGACCGGGAGCTCCACGACATCCTAAGCTAGACAACTTTTTTTTTTTTTTG
TCGTAAAGACAAGAAAAGTATGTATCTGCACTGCAAACTGCCATGGTCGGCACAATGTGGTTGTTTTCGTGTTGTGAATT
TTGCTTTGTTTCCATCAACATCAATGGATCGGTTTGGGCTGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis