Browse Element(s) Details


Os.55586.1.S1_at

Description gb:AK108365.1
DB_XREF= gi:32993574
TID=Os.55586.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D02, full insert sequence.
FL= gb:AK108365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4126010/11Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55586.1.S1_at--233--4911Chr04:24262215..24262239 (25 bp)
GCTTCTGTTTGATCACAATCTCGGG
LOC_Os04g41260
Os.55586.1.S1_at--811--3051Chr04:24262231..24262255 (25 bp)
AATCTCGGGCTGTGTTGGTCTGCAT
LOC_Os04g41260
Os.55586.1.S1_at--143--3031NONE
AATGCTGCTTCTGTATATTTTGGAT
NONE
Os.55586.1.S1_at--207--171Chr04:24262280..24262303 (24 bp)
ATTTTGGATTGTGGCGCACTGGCGC
LOC_Os04g41260
Os.55586.1.S1_at--79--10251Chr04:24262315..24262339 (25 bp)
TTTGAGGGCTGGAGCACACTAGCGA
LOC_Os04g41260
Os.55586.1.S1_at--533--2031Chr04:24262332..24262356 (25 bp)
ACTAGCGAGTAGTGCTCCTTGGTGC
LOC_Os04g41260
Os.55586.1.S1_at--288--4591Chr04:24262355..24262379 (25 bp)
GCGCAGGCTGAGGAAACTTGTGTTT
LOC_Os04g41260
Os.55586.1.S1_at--1126--8771Chr04:24262437..24262461 (25 bp)
TGTTTTCTTCTGCATTCGTATCCCA
LOC_Os04g41260
Os.55586.1.S1_at--344--91Chr04:24262450..24262474 (25 bp)
ATTCGTATCCCACAACAGACGTGAA
LOC_Os04g41260
Os.55586.1.S1_at--329--1911Chr04:24262468..24262492 (25 bp)
ACGTGAACCCTTTCTGCTATGAGCA
LOC_Os04g41260
Os.55586.1.S1_at--395--5931Chr04:24262488..24262512 (25 bp)
GAGCATCATTGAACACCGTTATGTA
LOC_Os04g41260
Target Sequence 
GCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCG
CACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTG
TGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCG
TATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis