Browse Element(s) Details


Os.55601.1.S1_at

Description gb:AK108399.1
DB_XREF= gi:32993608
TID=Os.55601.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G01, full insert sequence.
FL= gb:AK108399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g085501/11hypothetical protein
LOC_Os10g038601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08500NANA12+4309820..4312490hypothetical protein
LOC_Os12g08510OsAffx.16451.1.A1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.22699.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.8279.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510Os.52731.1.S1_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08510OsAffx.7789.1.S1_x_at1/1112+4313138..4319736retrotransposon protein, putative, unclassified
LOC_Os12g08520NANA12+4320513..4322774transposon protein, putative, Mutator sub-class
LOC_Os12g08530OsAffx.27108.2.S1_s_at11/1112+4323450..4324050GRF zinc finger family protein
LOC_Os12g08540NANA12+4329181..4329453hypothetical protein
LOC_Os12g08550Os.46707.1.A1_at2/1112+4335994..4336890hypothetical protein
LOC_Os12g08550Os.55601.1.S1_at1/1112+4335994..4336890hypothetical protein
LOC_Os12g08564Os.27520.8.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.7527.1.S1_x_at11/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.10255.1.S1_s_at9/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.46314.2.S1_x_at6/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.47114.1.S1_x_at3/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.22896.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.38269.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.26987.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564OsAffx.32036.1.S1_at1/1112+4336664..4353235expressed protein
LOC_Os12g08564Os.51910.1.S1_x_at1/1112+4336664..4353235expressed protein
LOC_Os12g08580OsAffx.16318.1.S1_x_at1/1112+4354378..4355340retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55601.1.S1_at--604--5811Chr12:7449665..7449689 (25 bp)
GACCCCGCAATGGTGGTTTCTAGTA
NONE
Os.55601.1.S1_at--464--9793Chr12:7449529..7449553 (25 bp)
TAAGATCGCCAGCACATGGCCTGGA
NONE
Os.55601.1.S1_at--796--4852Chr12:7449501..7449525 (25 bp)
GCTAGAGCTCTAATGGCGATCGGAT
NONE
Os.55601.1.S1_at--344--691Chr12:7449460..7449484 (25 bp)
ATGACGCGACTAAGGTTCATCTCCT
NONE
Os.55601.1.S1_at--155--6756Chr10:1736462..1736485 (24 bp)
GTTCATCTCCTTCTCCATTAAGGTT
LOC_Os10g03860
Os.55601.1.S1_at--898--3552Chr02:14087502..14087526 (25 bp)
CATTAAGGTTCTATGGCTCCATCAT
NONE
Os.55601.1.S1_at--1118--851Chr12:7449419..7449443 (25 bp)
ATGGCTCCATCATTGTGCCTATAGC
NONE
Os.55601.1.S1_at--1011--1151Chr12:7449390..7449414 (25 bp)
AGTCTGCGAGTTTTAGTCCTAGCTG
NONE
Os.55601.1.S1_at--715--7631Chr12:7449359..7449383 (25 bp)
GGGACTCTGTTTTATCCACTAGACA
NONE
Os.55601.1.S1_at--666--4511NONE
GCCGAGACATCATTGGCTGTGGACA
NONE
Os.55601.1.S1_at--371--8671Chr12:7449139..7449163 (25 bp)
TGTGGTGCACGCGATACATAGGATC
NONE
Target Sequence 
GACCCCGCAATGGTGGTTTCTAGTAGCGGTGAGATCATGCATGGAAGGTGCTTGATGAAATGTATTCGGGACGAAAGCTG
AGAGGAATGGGGATTTTACTGGGGGCTTAGCTTAGGGTGTAAGGAAACCATGGGGATAAGATCGCCAGCACATGGCCTGG
ATGAGCTAGAGCTCTAATGGCGATCGGATAAGAGCAATGAGGTGGATGACGCGACTAAGGTTCATCTCCTTCTCCATTAA
GGTTCTATGGCTCCATCATTGTGCCTATAGCCTATAGTCTGCGAGTTTTAGTCCTAGCTGGGGAAGGGGACTCTGTTTTA
TCCACTAGACATAAAGAGGGGCGCCGAGACATCATTGGCTGTGGACAAGGTGGCGGACGTGGCCATGGCGACGCGCGCAC
ATGGAAGCTGTGGCGGAACGGCGGCTTGGTTGGGCGGCGGGCCCACGCGGGCGCTGTGCGCCGTGGTGCGGTGCACGGGA
GGCAGGTGTGAGGCGGCATGGGCGTTGCTGGCGCGGCCGGGAGCGATGTGGTGCACGCGATACATAGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis