Browse Element(s) Details


Os.55618.1.S2_at

Description gb:AK111334.1
DB_XREF= gi:32996543
TID=Os.55618.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-E11, full insert sequence.
FL= gb:AK111334.1 gb:AK108426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3745411/11Organic cation transporter 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37480Os.56255.1.S1_x_at11/117+22440418..22442682expressed protein
LOC_Os07g37480Os.56255.1.S1_at10/117+22440418..22442682expressed protein
LOC_Os07g37480OsAffx.23361.2.S1_x_at1/117+22440418..22442682expressed protein
LOC_Os07g37490NANA7+22447647..22447913hypothetical protein
LOC_Os07g37500NANA7+22452438..22452806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55618.1.S2_at--911--4711Chr07:22427345..22427369 (25 bp)
GCTGGGAACATCTCTCCAGGATTAA
LOC_Os07g37454
Os.55618.1.S2_at--1047--2271Chr07:22427369..22427393 (25 bp)
AAATCCATATTCTCTAGCGCATAGT
LOC_Os07g37454
Os.55618.1.S2_at--641--2011Chr07:22427460..22427484 (25 bp)
ACTCATCTATCTTTGTTTTCCACAC
LOC_Os07g37454
Os.55618.1.S2_at--226--3291Chr07:22427484..22427508 (25 bp)
CAAACGCTTTCGAATCTGCTCAATG
LOC_Os07g37454
Os.55618.1.S2_at--956--10051Chr07:22427612..22427636 (25 bp)
TAGTGAGTCGTTTCGCTTTGCGGAC
LOC_Os07g37454
Os.55618.1.S2_at--532--3671Chr07:22427627..22427651 (25 bp)
CTTTGCGGACGCGAGTGATTAGTTC
LOC_Os07g37454
Os.55618.1.S2_at--953--131Chr07:22427644..22427668 (25 bp)
ATTAGTTCCCAATCCCAAATGCATG
LOC_Os07g37454
Os.55618.1.S2_at--399--10351Chr07:22427685..22427709 (25 bp)
TTTATAGTATCCAACCCTGCAAGTA
LOC_Os07g37454
Os.55618.1.S2_at--648--491Chr07:22427733..22427757 (25 bp)
ATCGGTTTAAGTCAGCTATGTTGCT
LOC_Os07g37454
Os.55618.1.S2_at--314--5971Chr07:22427822..22427846 (25 bp)
GAGAAACTACCCCAAGCAGTTGTTG
LOC_Os07g37454
Os.55618.1.S2_at--10--3451Chr07:22427838..22427862 (25 bp)
CAGTTGTTGGCTTTGTTGCTATGCA
LOC_Os07g37454
Target Sequence 
GCTGGGAACATCTCTCCAGGATTAAAATCCATATTCTCTAGCGCATAGTACTGATCATATCTATTTGATAGTAGTGGAAT
ATTCATTTAGGCTGAGTTTTTTTTATGACTTCCCCAACTCATCTATCTTTGTTTTCCACACAAACGCTTTCGAATCTGCT
CAATGATGTGTTTTTTTTAAAAAAAAAATCTACATAAAAGTTGCTTTGAAAACATATTGATTCTTTTTTTTATAAAATAA
ACTAGTTCTTAACTAATTTATCATGTGCTAGTGAGTCGTTTCGCTTTGCGGACGCGAGTGATTAGTTCCCAATCCCAAAT
GCATGCAGTAAGATTAGATAATTTATAGTATCCAACCCTGCAAGTAAAATGTGCTTTGCGTGAAAGACTATCGGTTTAAG
TCAGCTATGTTGCTGCGTTAATTAATTTTAGGTCCTGAACTTTCAGGGGAAAAAGGGGAGAAACTACCCCAAAAAGGGAG
AAACTACCCCAAGCAGTTGTTGGCTTTGTTGCTATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55618.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis