Browse Element(s) Details


Os.5563.1.S1_at

Description gb:AK102617.1
DB_XREF= gi:32987826
TID=Os.5563.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099F17, full insert sequence.
FL= gb:AK061053.1 gb:AK060043.1 gb:AK102617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4347011/11ER lumen protein retaining receptor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0016021cellular_componentintegral to membrane
GO:0004872molecular_functionreceptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5563.1.S1_at--518--6411Chr08:27366969..27366993 (25 bp)
GATCTCCTGGGCTTTCTGTGTTTAT
LOC_Os08g43470
Os.5563.1.S1_at--499--2691Chr08:27366998..27367022 (25 bp)
AAGCTGTTTCAGTGCTGCCACAGTT
LOC_Os08g43470
Os.5563.1.S1_at--51--4791Chr08:27367011..27367035 (25 bp)
GCTGCCACAGTTGCGTTTGATGCAA
LOC_Os08g43470
Os.5563.1.S1_at--366--7531Chr08:27367132..27367156 (25 bp)
GTGGAACCATTTACAGCTCATTATG
LOC_Os08g43470
Os.5563.1.S1_at--47--811Chr08:27367809..27367833 (25 bp)
ATGGTGCTTCTCTCTGAAATCGTTC
LOC_Os08g43470
Os.5563.1.S1_at--829--10231Chr08:27367955..27367979 (25 bp)
TTTGGTGGGCAACTTGTCCTTCGAC
LOC_Os08g43470
Os.5563.1.S1_at--553--10591Chr08:27367974..27367998 (25 bp)
TTCGACTTCCGTCTGGAGTGGTGTA
LOC_Os08g43470
Os.5563.1.S1_at--506--10111Chr08:27368023..27368047 (25 bp)
TATGGGCTTTGTGCACGTTTAGTAC
LOC_Os08g43470
Os.5563.1.S1_at--379--511Chr08:27368048..27368072 (25 bp)
ATCGTCGGATACCAGAGCCTTGTTT
LOC_Os08g43470
Os.5563.1.S1_at--810--731Chr08:27368114..27368138 (25 bp)
ATGTACCTACCAGAGACCGTGATGA
LOC_Os08g43470
Os.5563.1.S1_at--99--411Chr08:27368181..27368205 (25 bp)
ATCAGTTGTCGCAGGCCCCAATAGA
LOC_Os08g43470
Target Sequence 
GATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTG
TGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTT
NTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTNTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCA
GACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTG
GAGTGGTGTAAAAATGCAGCAGGATGCAACATGTTATGGGCTTTGTGCACGTTTAGTACATCGTCGGATACCAGAGCCTT
GTTTGCTTGATAATTTTTTTCAGTTACAAATTGCTCATGTGAAAAATGTACCTACCAGAGACCGTGATGAAATCTAGAGA
CTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis