Browse Element(s) Details


Os.55638.1.S1_at

Description gb:AK108458.1
DB_XREF= gi:32993667
TID=Os.55638.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D05, full insert sequence.
FL= gb:AK108458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3675011/11L-ascorbate peroxidase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein
LOC_Os09g36730Os.7125.1.S1_at11/119+21189041..21190257Myb-related protein Hv1, putative, expressed
LOC_Os09g36740Os.50511.1.S1_at11/119+21197022..21199207male sterility MS5, putative, expressed
LOC_Os09g36750Os.55638.1.S1_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_s_at11/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36750OsAffx.30157.1.S1_at10/119+21199250..21202282L-ascorbate peroxidase 4, putative, expressed
LOC_Os09g36760OsAffx.30158.1.S1_at11/119+21208472..21212573expressed protein
LOC_Os09g36760OsAffx.30664.1.S1_s_at1/119+21208472..21212573expressed protein
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005778cellular_componentperoxisomal membrane
GO:0005829cellular_componentcytosol
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55638.1.S1_at--293--6931Chr09:21199371..21199395 (25 bp)
GTAGAGATTGGTTGGGTTCTAAACA
LOC_Os09g36750
Os.55638.1.S1_at--1089--7911Chr09:21199362..21199386 (25 bp)
GGTTGGGTTCTAAACATTGATTTGC
LOC_Os09g36750
Os.55638.1.S1_at--838--51Chr09:21199347..21199371 (25 bp)
ATTGATTTGCAATTGCTCAACAGCA
LOC_Os09g36750
Os.55638.1.S1_at--36--5211Chr09:21199339..21199363 (25 bp)
GCAATTGCTCAACAGCAGAATCAAT
LOC_Os09g36750
Os.55638.1.S1_at--111--3411Chr09:21199327..21199351 (25 bp)
CAGCAGAATCAATAGCATCAGGAAT
LOC_Os09g36750
Os.55638.1.S1_at--88--4971Chr09:21199313..21199337 (25 bp)
GCATCAGGAATAAAGTTTTCAGAAA
LOC_Os09g36750
Os.55638.1.S1_at--1156--10371Chr09:21199298..21199322 (25 bp)
TTTTCAGAAACAAGTGTCATCAGGA
LOC_Os09g36750
Os.55638.1.S1_at--1112--7431Chr09:21199285..21199309 (25 bp)
GTGTCATCAGGAAGGATGTTCAACT
LOC_Os09g36750
Os.55638.1.S1_at--839--991Chr09:21199273..21199297 (25 bp)
AGGATGTTCAACTGTTTTGTGGCCA
LOC_Os09g36750
Os.55638.1.S1_at--471--6731Chr09:21199268..21199292 (25 bp)
GTTCAACTGTTTTGTGGCCAGCTAT
LOC_Os09g36750
Os.55638.1.S1_at--773--7551Chr09:21199255..21199279 (25 bp)
GTGGCCAGCTATGAAATGACAGTTT
LOC_Os09g36750
Target Sequence 
GTAGAGATTGGTTGGGTTCTAAACATTGATTTGCAATTGCTCAACAGCAGAATCAATAGCATCAGGAATAAAGTTTTCAG
AAACAAGTGTCATCAGGAAGGATGTTCAACTGTTTTGTGGCCAGCTATGAAATGACAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis