Browse Element(s) Details


Os.55656.1.S1_at

Description gb:AK108501.1
DB_XREF= gi:32993710
TID=Os.55656.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H04, full insert sequence.
FL= gb:AK108501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g624009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62370Os.10956.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62370Os.42477.1.S1_at11/111+36421747..36423712ENTH domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S1_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62380Os.42475.1.S2_at11/111+36427400..36431110Fasciclin domain containing protein, expressed
LOC_Os01g62390Os.6301.1.S1_at11/111+36432257..36434864Growth regulator protein, putative, expressed
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55656.1.S1_at--276--6551Chr01:36444776..36444800 (25 bp)
GATTATTTGATTCATTTGCCAGAGA
LOC_Os01g62400
Os.55656.1.S1_at--377--2931Chr01:36444814..36444838 (25 bp)
AAGGCTTTTTAGATGCTTGCATGGG
LOC_Os01g62400
Os.55656.1.S1_at--942--8551Chr01:36444857..36444881 (25 bp)
TGGATGTGCGCACTTATGGTGTTCT
LOC_Os01g62400
Os.55656.1.S1_at--508--7751Chr01:36444874..36444898 (25 bp)
GGTGTTCTGGTTCATGCACTCTTCA
LOC_Os01g62400
Os.55656.1.S1_at--196--6651Chr01:36444955..36444979 (25 bp)
GTTGAACCGGGCAATGTGATCTATG
LOC_Os01g62400
Os.55656.1.S1_at--670--6671Chr01:36445063..36445087 (25 bp)
GTTCCAAATTCCGTAAGGTATGCCT
LOC_Os01g62400
Os.55656.1.S1_at--306--6211Chr01:36445138..36445162 (25 bp)
GAGGCTCTGCTCGATGACATGGTCC
LOC_Os01g62400
Os.55656.1.S1_at--820--811Chr01:36445156..36445180 (25 bp)
ATGGTCCGTGCTGGTCTGCAAACAA
LOC_Os01g62400
Os.55656.1.S1_at--800--7351Chr01:36445181..36445205 (25 bp)
GTGAACCAATCTGCCAGTTTACTGA
LOC_Os01g62400
Os.55656.1.S1_at--693--6011Chr01:36445222..36445246 (25 bp)
GAGAGGTTCTACTGATGGCTCTTTT
NONE
Os.55656.1.S1_at--420--6931Chr01:36445253..36445277 (25 bp)
GTAGGAATTCATTTCTTTTCATGTT
NONE
Target Sequence 
GATTATTTGATTCATTTGCCAGAGAAAATGACATGAATAAGGCTTTTTAGATGCTTGCATGGGAGAAGGCAGGTCTAGAG
GTGGATGTGCGCACTTATGGTGTTCTGGTTCATGCACTCTTCATGGAAGGGCATATGAAGGATGCCAGGAAGCTGTTTCA
GTCAATGGACCAGAAAGGTGTTGAACCGGGCAATGTGATCTATGACATGATGATTTATGGCTATGGAAGAGAAGGGAGTT
GATACAAGGCTCTGAAGTTGATCATGGAAATGAGGCAGAAGGGTTTGGTTCCAAATTCCGTAAGGTATGCCTTGATGATG
ACGATTTGTTTTCTTTGCAATGATGATAAATGTCAGGAAGCTGAGGCTCTGCTCGATGACATGGTCCGTGCTGGTCTGCA
AACAAGTGAACCAATCTGCCAGTTTACTGAATGCCAAGGCAAGATTGAGAGGTTCTACTGATGGCTCTTTTGTGTAAGTA
GGAATTCATTTCTTTTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis