Browse Element(s) Details


Os.55661.1.S1_at

Description gb:AK108510.1
DB_XREF= gi:32993719
TID=Os.55661.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A03, full insert sequence.
FL= gb:AK108510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3878011/11CCAAT-box binding factor HAP5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38730NANA8+24359580..24360044expressed protein
LOC_Os08g38740OsAffx.6076.1.S1_at11/118+24362472..24366048Glycosyltransferase QUASIMODO1, putative
LOC_Os08g38750NANA8+24367675..24368124hypothetical protein
LOC_Os08g38760Os.57126.1.S1_at11/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.17410.1.S1_x_at10/118+24371107..24382118expressed protein
LOC_Os08g38760OsAffx.2482.1.S1_at1/118+24371107..24382118expressed protein
LOC_Os08g38780Os.55661.1.S1_at11/118+24384755..24385716CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os08g38790OsAffx.17410.1.S1_x_at11/118+24387967..24390216hypothetical protein
LOC_Os08g38800OsAffx.6079.1.S1_at1/118+24391718..24396287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g38810Os.49777.1.S1_at11/118+24400418..24402095RAFTIN1a protein, putative, expressed
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55661.1.S1_at--654--7271Chr08:24385440..24385464 (25 bp)
GTCCAGCCGCAGTAACATTTTCCTA
LOC_Os08g38780
Os.55661.1.S1_at--523--171Chr08:24385456..24385480 (25 bp)
ATTTTCCTACCGTATAGCTTCAAGT
LOC_Os08g38780
Os.55661.1.S1_at--663--10311Chr08:24385511..24385535 (25 bp)
TTTCTGCTGTTGTCGTAGTTGTTAT
LOC_Os08g38780
Os.55661.1.S1_at--48--7211Chr08:24385522..24385546 (25 bp)
GTCGTAGTTGTTATTATGTTTTGCT
LOC_Os08g38780
Os.55661.1.S1_at--852--731Chr08:24385537..24385561 (25 bp)
ATGTTTTGCTTGTTGTTGCCGTGTA
LOC_Os08g38780
Os.55661.1.S1_at--1035--6631Chr08:24385548..24385572 (25 bp)
GTTGTTGCCGTGTAATAACTAGAAG
LOC_Os08g38780
Os.55661.1.S1_at--396--6551Chr08:24385577..24385601 (25 bp)
GATTATCATTGTGAGGAGCCTCCTC
LOC_Os08g38780
Os.55661.1.S1_at--207--1691Chr08:24385593..24385617 (25 bp)
AGCCTCCTCTCGGTGTATAAACAAT
LOC_Os08g38780
Os.55661.1.S1_at--568--31Chr08:24385629..24385653 (25 bp)
ATTGGGCGAGCTTTGTTGCGATTGA
LOC_Os08g38780
Os.55661.1.S1_at--106--3691Chr08:24385639..24385663 (25 bp)
CTTTGTTGCGATTGAGGAAGGCTGT
LOC_Os08g38780
Os.55661.1.S1_at--424--6331Chr08:24385675..24385699 (25 bp)
GATGCATGTCTAACTTATATCACAA
LOC_Os08g38780
Target Sequence 
GTCCAGCCGCAGTAACATTTTCCTACCGTATAGCTTCAAGTTTATTTAGCGATTTTTATTTATGGAATGCTTTTCTGCTG
TTGTCGTAGTTGTTATTATGTTTTGCTTGTTGTTGCCGTGTAATAACTAGAAGATGTGATTATCATTGTGAGGAGCCTCC
TCTCGGTGTATAAACAATCCGATTTGAGGATTGGGCGAGCTTTGTTGCGATTGAGGAAGGCTGTATGGTGGTTTTGATGC
ATGTCTAACTTATATCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis