Browse Element(s) Details


Os.55676.1.S1_at

Description gb:AK108538.1
DB_XREF= gi:32993747
TID=Os.55676.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C10, full insert sequence.
FL= gb:AK108538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6599211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65940OsAffx.11748.1.S1_at11/111+38609421..38613643Protein kinase domain containing protein, expressed
LOC_Os01g65950NANA1+38614801..38615042hypothetical protein
LOC_Os01g65960NANA1+38617371..38617718thioesterase family protein, expressed
LOC_Os01g65970OsAffx.11749.1.S1_at11/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.11749.1.S1_x_at10/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65970OsAffx.6141.1.S1_x_at7/111+38618659..38619470Transcription factor HBP-1b, putative
LOC_Os01g65980NANA1+38624337..38624765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g65986Os.49295.1.S1_at11/111+38626848..38632491Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65992OsAffx.23931.1.S1_x_at11/111+38632673..38633575expressed protein
LOC_Os01g65992Os.55676.1.S1_at11/111+38632673..38633575expressed protein
LOC_Os01g66000OsAffx.23932.1.S1_at11/111+38633605..38634552expressed protein
LOC_Os01g66010Os.50896.1.S1_at11/111+38637437..38640480amino acid carrier, putative, expressed
LOC_Os01g66020OsAffx.11750.1.S1_at11/111+38645909..38648075Protein kinase domain containing protein, expressed
LOC_Os01g66030Os.429.1.S1_at11/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66030OsAffx.27979.1.S1_x_at1/111+38648187..38650919MADS-box transcription factor 2, putative, expressed
LOC_Os01g66040Os.46331.1.S1_s_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66040OsAffx.11751.1.S1_at11/111+38651379..38652432receptor kinase, putative
LOC_Os01g66050Os.37409.1.S1_at11/111+38656028..38659444wound-responsive family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55676.1.S1_at--40--9971Chr01:38633378..38633402 (25 bp)
TACCTACGCCGCTGATGAGACGAAA
LOC_Os01g65992
Os.55676.1.S1_at--123--9951Chr01:38633382..38633406 (25 bp)
TACGCCGCTGATGAGACGAAAGGAT
LOC_Os01g65992
Os.55676.1.S1_at--1026--4091Chr01:38633398..38633422 (25 bp)
CGAAAGGATCGCATGGTCTTCTGAT
LOC_Os01g65992
Os.55676.1.S1_at--243--3511Chr01:38633409..38633433 (25 bp)
CATGGTCTTCTGATGGATTTGTATT
LOC_Os01g65992
Os.55676.1.S1_at--557--3652Chr01:38633415..38633439 (25 bp)
CTTCTGATGGATTTGTATTATGTGA
LOC_Os01g65992
Os.55676.1.S1_at--489--6851Chr01:38633442..38633466 (25 bp)
GTTTGATTTTACATGGTTGTCTTGG
LOC_Os01g65992
Os.55676.1.S1_at--140--6931Chr01:38633485..38633509 (25 bp)
GTATGTACATTCTTCATTGCCTCTC
LOC_Os01g65992
Os.55676.1.S1_at--119--7031Chr01:38633489..38633513 (25 bp)
GTACATTCTTCATTGCCTCTCTCAA
LOC_Os01g65992
Os.55676.1.S1_at--20--10711Chr01:38633501..38633525 (25 bp)
TTGCCTCTCTCAAGTGAAGTACAAA
LOC_Os01g65992
Os.55676.1.S1_at--1123--9831Chr01:38633520..38633544 (25 bp)
TACAAAGCGGGAAACAATGTGTGTT
LOC_Os01g65992
Os.55676.1.S1_at--195--3211Chr01:38633534..38633558 (25 bp)
CAATGTGTGTTGGATGAGATATATA
LOC_Os01g65992
Target Sequence 
TACCTACGCCGCTGATGAGACGAAAGGATCGCATGGTCTTCTGATGGATTTGTATTATGTGAAAGTTTGATTTTACATGG
TTGTCTTGGGGTAATTTGAGCCAAAATGTATGTACATTCTTCATTGCCTCTCTCAAGTGAAGTACAAAGCGGGAAACAAT
GTGTGTTGGATGAGATATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis