Browse Element(s) Details


Os.55681.1.S1_x_at

Description gb:AK108548.1
DB_XREF= gi:32993757
TID=Os.55681.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E01, full insert sequence.
FL= gb:AK108548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55681.1.S1_x_at--529--3971Chr08:1583522..1583546 (25 bp)
CGGTCTACGTCGACGAGCTCTACAG
LOC_Os08g03400
Os.55681.1.S1_x_at--970--5771Chr08:1583511..1583535 (25 bp)
GACGAGCTCTACAGCCATCCCAAGA
LOC_Os08g03400
Os.55681.1.S1_x_at--1090--2191Chr08:1583369..1583393 (25 bp)
ACAACAACAACGCTGTAGCCGCGAC
LOC_Os08g03400
Os.55681.1.S1_x_at--336--4731Chr08:1583358..1583382 (25 bp)
GCTGTAGCCGCGACCAACGCTAGCG
LOC_Os08g03400
Os.55681.1.S1_x_at--665--1431Chr08:1583318..1583342 (25 bp)
AGAACGCTGCCGCTGATGCTGCGAC
LOC_Os08g03400
Os.55681.1.S1_x_at--556--3951Chr08:1583251..1583275 (25 bp)
CGGCAAGAAAGCTGCTGCCGCTGGC
LOC_Os08g03400
Os.55681.1.S1_x_at--620--9031Chr08:1583075..1583099 (25 bp)
TGCAGAACCAGAAATCCGCCGAGGA
LOC_Os08g03400
Os.55681.1.S1_x_at--1016--2251Chr08:1583064..1583088 (25 bp)
AAATCCGCCGAGGAATTCCAAGCCA
LOC_Os08g03400
Os.55681.1.S1_x_at--1099--3151Chr08:1583051..1583075 (25 bp)
AATTCCAAGCCATGCTCGCGAGAGG
LOC_Os08g03400
Os.55681.1.S1_x_at--94--9351Chr08:1583036..1583060 (25 bp)
TCGCGAGAGGCCTATGACACATCAT
LOC_Os08g03400
Os.55681.1.S1_x_at--215--5631Chr08:1583021..1583045 (25 bp)
GACACATCATCATCTTAGTTTATTA
LOC_Os08g03400
Target Sequence 
CGGTCTACGTCGACGAGCTCTACAGCCATCCCAAGACCCACCACGTCGCCGTCCACGAGGCGCAGGCGCAGCAGCCGAAC
ACCACCGCTGCCAAGACCAACGCCGGCGCCGCCAGCGGCAAGGCGCGCGCCGTCGCCGCCGCCGCCGCCAACAACAACAA
CAACGCTGTAGCCGCGACCAACGCTAGCGCCATGTTCGCCGCCAAGAACGCTGCCGCTGATGCTGCGACCAACGCCGCTG
CCGGGGCCAGAGGCAAGGGGCGGGTGGGCGGCGGCAAGAAAGCTGCTGCCGCTGGCGCGGCGACCAACGGCGGCGGCGCC
AAGGCGGCGCGCGGCGGCGTGAGGAGCTTGCTGATGAGCCCGCTGAGAGGAGGAGGAGCGTGTGGGATGGGGGAGGTGGA
TGTGAGGGCGGAGGTGTTCATCAGAAAGTTCAGGGAGGAGATGAGGCTGCAGAACCAGAAATCCGCCGAGGAATTCCAAG
CCATGCTCGCGAGAGGCCTATGACACATCATCATCTTAGTTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55681.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis