Browse Element(s) Details


Os.55684.1.S1_at

Description gb:AK108553.1
DB_XREF= gi:32993762
TID=Os.55684.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E08, full insert sequence.
FL= gb:AK108553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5515010/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55684.1.S1_at--773--7091NONE
GTCACAACCCTGCAGAACGAGGTAT
NONE
Os.55684.1.S1_at--198--631Chr01:32056826..32056848 (23 bp)
ATGCTCATCAGGAGGCGTTGAGGAA
LOC_Os01g55150
Os.55684.1.S1_at--186--6211Chr01:32056864..32056888 (25 bp)
GAGGCAGGTATACCAGCAGCAGAAC
LOC_Os01g55150
Os.55684.1.S1_at--558--2471Chr01:32056886..32056910 (25 bp)
AACACCAAGTTGTCCGGTGGTCTGG
LOC_Os01g55150
Os.55684.1.S1_at--603--4751Chr01:32056913..32056937 (25 bp)
GCTGACCACGCACATGTCCATGGCG
LOC_Os01g55150
Os.55684.1.S1_at--796--8071Chr01:32056963..32056987 (25 bp)
GGAGCTCATGAGCTAGCTGATCAAT
LOC_Os01g55150
Os.55684.1.S1_at--279--1611Chr01:32056977..32057001 (25 bp)
AGCTGATCAATTTGCCTACTGTCCC
LOC_Os01g55150
Os.55684.1.S1_at--712--7331Chr01:32057004..32057028 (25 bp)
GTGCAGTCTGCCTTAGCATTAACTT
LOC_Os01g55150
Os.55684.1.S1_at--393--2531Chr01:32057024..32057048 (25 bp)
AACTTTGGAGGGAACATTGCATCAT
LOC_Os01g55150
Os.55684.1.S1_at--1141--5431Chr01:32057049..32057073 (25 bp)
GAACCTGTGGATGTTTTCTTCTTCT
LOC_Os01g55150
Os.55684.1.S1_at--538--8811Chr01:32057128..32057152 (25 bp)
TGTTGATTGGAGTTCTGGTTTACAA
LOC_Os01g55150
Target Sequence 
GTCACAACCCTGCAGAACGAGGTATCCGTGCTGTCCCCTCGGGTGGCGTTTCTGGATCAGNAGCGGACGATCCTGACCGT
CGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGCTCATCAGGAGGCGTTGA
GGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGAACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCA
CATGTCCATGGCGGCCCGCCGCCTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTG
TGCAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTCTTCTTCTTCTTNTTTTTN
NGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCGGNTGTTGATTGGAGTTCTGGTTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis