Browse Element(s) Details


Os.55704.1.S1_at

Description gb:AK108606.1
DB_XREF= gi:32993815
TID=Os.55704.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G12, full insert sequence.
FL= gb:AK108606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2802011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein
LOC_Os04g28060Os.51166.1.S1_at11/114+16380327..16383645expressed protein
LOC_Os04g28074OsAffx.26194.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.26195.1.S1_at11/114+16384265..16392270hypothetical protein
LOC_Os04g28074OsAffx.7849.1.S1_at3/114+16384265..16392270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55704.1.S1_at--392--291Chr04:16362389..16362413 (25 bp)
ATAGTTGCTAATCTTTCTGCTAGGA
LOC_Os04g28020
Os.55704.1.S1_at--423--8791Chr04:16362415..16362439 (25 bp)
TGTTACCGCGGAAATTGTCACTCTC
LOC_Os04g28020
Os.55704.1.S1_at--104--5511Chr04:16362476..16362500 (25 bp)
GAACACATTGCTGGTCTACACAACT
LOC_Os04g28020
Os.55704.1.S1_at--722--9851Chr04:16362492..16362975 (25 bp)
TACACAACTTGTTCCAGGTCTGCAG
LOC_Os04g28020
Os.55704.1.S1_at--1003--7311Chr04:16363062..16363086 (25 bp)
GTGCTTTGCTCTTCGGCATGATGCT
LOC_Os04g28020
Os.55704.1.S1_at--893--9331Chr04:16363105..16363129 (25 bp)
TCGCGCCACCGTTGAGATGGAGCAG
LOC_Os04g28020
Os.55704.1.S1_at--1150--5931Chr04:16363124..16363148 (25 bp)
GAGCAGCAGAGACTTCTCCGTGAGA
LOC_Os04g28020
Os.55704.1.S1_at--143--8911Chr04:16363144..16363168 (25 bp)
TGAGATCGACTCTTTCTTCTTCCAG
LOC_Os04g28020
Os.55704.1.S1_at--1083--5471Chr04:16363189..16363213 (25 bp)
GAACAGCGTGAAGTAACCCAAGTCT
LOC_Os04g28020
Os.55704.1.S1_at--1028--1151Chr04:16363209..16363233 (25 bp)
AGTCTCAAGGTCTTAAGGCCAGCCC
LOC_Os04g28020
Os.55704.1.S1_at--654--7951Chr04:16363335..16363359 (25 bp)
GGATACTCACATCTTCCTTGTTGAT
LOC_Os04g28020
Target Sequence 
ATAGTTGCTAATCTTTCTGCTAGGAATGTTACCGCGGAAATTGTCACTCTCTTCAGTGAACTTATGGCCAAAAACTATCT
CAATCAAGAACACATTGCTGGTCTACACAACTTGTTCCAGGTCTGCAGGAGACAGGCCTATGAGGGAGGCGGCGGCTCGA
AGGCGCAGCCCTCGGAGCAGAAGGCTGCGGCGGCGAGATGCGCCGACGACGTGCGTGCTTTGCTCTTCGGCATGATGCTG
GAGCAGCGGGCGTGCTCTCGCGCCACCGTTGAGATGGAGCAGCAGAGACTTCTCCGTGAGATCGACTCTTTCTTCTTCCA
GGAGTCGAGCCTGCGAGAACAGAACAGCGTGAAGTAACCCAAGTCTCAAGGTCTTAAGGCCAGCCCCCGGCCAACAAACC
AGGCACCTCGTACAGCTCCCCCCTAATCCGTATAGTTTTTTTTTTTTTTTTTGACATTCCTAATCTGTATAGATGCTTAT
AAGTAATTAGGGATACTCACATCTTCCTTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis