Browse Element(s) Details


Os.55743.1.S1_at

Description gb:AK108705.1
DB_XREF= gi:32993914
TID=Os.55743.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A04, full insert sequence.
FL= gb:AK108705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05920OsAffx.10637.3.S1_s_at10/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.4.S1_s_at9/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_x_at8/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.10637.1.S1_s_at5/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05920OsAffx.32056.1.S1_at3/1111+2775341..2780748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05930Os.12795.1.S1_at11/1111+2784900..2789632CCT motif family protein, expressed
LOC_Os11g05940OsAffx.7008.1.S1_at10/1111+2794876..2798125hypothetical protein
LOC_Os11g05950Os.55743.1.S1_at11/1111+2803518..2804262expressed protein
LOC_Os11g05960OsAffx.18698.1.S1_at11/1111+2805561..2805887hypothetical protein
LOC_Os11g05970OsAffx.18699.1.S1_at11/1111+2806826..2808073pyridine nucleotide-disulphide oxidoreductase family protein, putative
LOC_Os11g05980Os.53017.1.S1_at11/1111+2810377..2813120pentatricopeptide, putative, expressed
LOC_Os11g05990Os.27753.1.S1_at11/1111+2813505..2820113digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os11g06000OsAffx.18700.1.S1_at11/1111+2826425..2826894hypothetical protein
LOC_Os11g06010Os.31883.1.A1_at11/1111+2827513..2833603expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55743.1.S1_at--285--8051Chr11:2804094..2804118 (25 bp)
GGAGATCGGCATTATTGCTGCTGCC
LOC_Os11g05950
Os.55743.1.S1_at--847--6131Chr11:2803712..2803736 (25 bp)
GAGGTGTACCCGACGAGAACCTTGA
LOC_Os11g05950
Os.55743.1.S1_at--637--10491Chr11:2803691..2803715 (25 bp)
TTGAACCCTCCCAGGAAACAGGTGC
LOC_Os11g05950
Os.55743.1.S1_at--74--2411Chr11:2803676..2803700 (25 bp)
AAACAGGTGCGAAACCGCCGCGTCT
LOC_Os11g05950
Os.55743.1.S1_at--1004--4151Chr11:2803661..2803685 (25 bp)
CGCCGCGTCTGCTGAGGAATTGAAG
LOC_Os11g05950
Os.55743.1.S1_at--984--3171Chr11:2803628..2803652 (25 bp)
CAATGCCATGGAGACGTACGTTTAG
LOC_Os11g05950
Os.55743.1.S1_at--964--5971Chr11:2803604..2803628 (25 bp)
GAGAAATACACTCATGTTCATGTCC
LOC_Os11g05950
Os.55743.1.S1_at--635--3731Chr11:2803594..2803618 (25 bp)
CTCATGTTCATGTCCCAAATTAAAT
LOC_Os11g05950
Os.55743.1.S1_at--183--7451Chr11:2803554..2803578 (25 bp)
GTGTAATCATCCATTTGTAGACGAA
LOC_Os11g05950
Os.55743.1.S1_at--892--5791Chr11:2803535..2803559 (25 bp)
GACGAATATCACTTAAGAGCAGCAT
LOC_Os11g05950
Os.55743.1.S1_at--1006--5932Chr11:2803519..2803543 (25 bp)
GAGCAGCATGTACAACGATCTTTAT
LOC_Os11g05950
Target Sequence 
GGAGATCGGCATTATTGCTGCTGCCGATCACACCGCCGCCGTCCACGCTCGCCGCGACGCCGTCGTCGAGGAGCTCGCCG
CGCGCCTCGTCGGCATCCTCGGCCTCACGTCGCCGCCGTCCGCCGGCGCAGGCAGACTGGGAGAGAAACGTGCCGCGGCT
GCGACGACGACGACGAGTAGTGGCGGCGCCACCCCGCCGTACGGCCGCTCACATGTGCGCCGCCGCGAGCAGCACCTCGC
CGCCGGCGGCGGCGGCGGCGGCGTCATCGACGGAGGGATGGCGCGGTACCACGCGCCGGGGTTCGGGACGACACAGTGGC
TGGCGCCGCCGGCGTGGTGCGGCGGCGGCGGCGGCGGCACCGGCGTGTTCTTGCCGCGTGGCGAGGTGTACCCGACGAGA
ACCTTGAACCCTCCCAGGAAACAGGTGCGAAACCGCCGCGTCTGCTGAGGAATTGAAGGAGGCTGCCAATGCCATGGAGA
CGTACGTTTAGAGAAATACACTCATGTTCATGTCCCAAATTAAATCATCACATAATAAATGTGTAATCATCCATTTGTAG
ACGAATATCACTTAAGAGCAGCATGTACAACGATCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis