Browse Element(s) Details


Os.5581.1.S1_at

Description gb:AK107941.1
DB_XREF= gi:32993150
TID=Os.5581.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0070N04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B01, full insert sequence.
FL= gb:AK107941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5654010/11DNAJ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5581.1.S1_at--337--1231Chr03:32148046..32148070 (25 bp)
AGTTGTCCCCGGTCGGTGTCGATAT
LOC_Os03g56540
Os.5581.1.S1_at--1064--8711NONE
TGTCGATATGGCTACTCCCTTGGTA
NONE
Os.5581.1.S1_at--1047--9291Chr03:32149133..32149157 (25 bp)
TCCCTTGGTAGCTGGGTTGTCAGTA
LOC_Os03g56540
Os.5581.1.S1_at--557--6631Chr03:32149148..32149172 (25 bp)
GTTGTCAGTAGCTGCTGCTGCAATG
LOC_Os03g56540
Os.5581.1.S1_at--716--1871Chr03:32149229..32149253 (25 bp)
ACGAGTGCGGCGGTTCTACCCTGGT
LOC_Os03g56540
Os.5581.1.S1_at--617--7831Chr03:32149504..32149528 (25 bp)
GGTAATGGTAGCCAATCACCCTGAT
LOC_Os03g56540
Os.5581.1.S1_at--262--4731Chr03:32149529..32149553 (25 bp)
GCTGGTGGGAGCCATTACATCGCTT
LOC_Os03g56540
Os.5581.1.S1_at--234--10411Chr03:32149637..32149661 (25 bp)
TTTTGTTTTTGCCATGACCATGATG
LOC_Os03g56540
Os.5581.1.S1_at--44--1111Chr03:32149668..32149692 (25 bp)
AGTGGTTCATGTTAATCGACCTTAA
LOC_Os03g56540
Os.5581.1.S1_at--289--3051Chr03:32149681..32149705 (25 bp)
AATCGACCTTAACATGCTGTGCTGA
LOC_Os03g56540
Os.5581.1.S1_at--669--3531Chr03:32149693..32149717 (25 bp)
CATGCTGTGCTGATTGTACCATAGA
LOC_Os03g56540
Target Sequence 
AGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGNNNNNNANN
ANATNNNNNCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCTGGTGGATT
CGAGAGAGAAATGACAAGAAGAGAGGCGGCNCTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGG
CTCNCAAGAGGGTAATGGTAGCCAATCACCCTGATGCTGGTGGGAGCCATTACATCGCTTNCGAAGATAAATGAGGCAAA
GGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATG
ACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis