Browse Element(s) Details


Os.5608.3.S1_x_at

Description gb:NM_188563.1
DB_XREF= gi:34904209
GEN=P0443E07.21
TID=Os.5608.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0443E07.21 (P0443E07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0443E07.21 (P0443E07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1268011/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g288401/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g434601/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os07g083501/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g507701/11C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g133201/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os04g485301/11C4-dicarboxylate transporter/malic acid transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5608.3.S1_x_at--102--1011Chr01:6989593..6989617 (25 bp)
AGGATCACCGGCGAGTTCGGCTACG
LOC_Os01g12680
Os.5608.3.S1_x_at--691--4651Chr01:6989624..6989648 (25 bp)
GCGTCGCCTACTTCATCGCCATGTT
LOC_Os01g12680
Os.5608.3.S1_x_at--52--9351Chr01:6989659..6989790 (25 bp)
TCGCTGGCGGTGAGGATCAACCTGT
LOC_Os01g12680
Os.5608.3.S1_x_at--46--8637Chr07:4285103..4285127 (25 bp)
TGGTGGGCGTACACGTTCCCGATGA
LOC_Os07g08350
Os.5608.3.S1_x_at--1052--4691Chr01:6989847..6989871 (25 bp)
GCGGCGATCGCGTCGATCCGGTACT
LOC_Os01g12680
Os.5608.3.S1_x_at--1098--9371Chr01:6989859..6989883 (25 bp)
TCGATCCGGTACTCGTCGGAGGTGA
LOC_Os01g12680
Os.5608.3.S1_x_at--191--1851Chr01:6989895..6989919 (25 bp)
ACGCAGTCGCTCTGCATCGCGCTGT
LOC_Os01g12680
Os.5608.3.S1_x_at--434--4091Chr01:6989929..6989953 (25 bp)
CGACGCTCACGGTCACGGCGCTGTT
LOC_Os01g12680
Os.5608.3.S1_x_at--715--531Chr01:6990042..6990066 (25 bp)
ATCGCCGAGATCCACGAGCAGCAGC
LOC_Os01g12680
Os.5608.3.S1_x_at--24--5711Chr01:6990114..6990138 (25 bp)
GACTCAGCCTGCATTAAGGACCTCG
LOC_Os01g12680
Os.5608.3.S1_x_at--363--111Chr01:6990126..6990150 (25 bp)
ATTAAGGACCTCGAAGCCGGCGTGC
LOC_Os01g12680
Target Sequence 
AGGATCACCGGCGAGTTCGGCTACGGCTCCCGCGTCGCCTACTTCATCGCCATGTTCCTCTACGCCTCGCTGGCGGTGAG
GATCAACCTGTTCAGGGGGTTCAGGTTCTCGCTGGCGTGGTGGGCGTACACGTTCCCGATGACGAGCGCGGCGATCGCGT
CGATCCGGTACTCGTCGGAGGTGAAGAACGCGTTCACGCAGTCGCTCTGCATCGCGCTGTCCGTGCTGGCGACGCTCACG
GTCACGGCGCTGTTCCTCACCACGCTGCTGCACGCCGCCGTCCACCGCGACCTCTTCCCCAACGACATCTCCATCGCCAT
CACCGAGCGCAAGCTCAAGCCCATCGCCGAGATCCACGAGCAGCAGCAGCAGCAGCGCGACAAGAACGCCACCACCGCCG
CCGACATCCACCCCGACTCAGCCTGCATTAAGGACCTCGAAGCCGGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5608.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis