Browse Element(s) Details


Os.56080.1.S1_at

Description gb:AK109228.1
DB_XREF= gi:32994437
TID=Os.56080.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E12, full insert sequence.
FL= gb:AK109228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4728010/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47230Os.51350.1.S1_at5/113+26680250..26680597Phytosulfokines 3 precursor, putative
LOC_Os03g47240OsAffx.25597.1.S1_at10/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.25952.1.S1_s_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_at3/113+26681942..26685381expressed protein
LOC_Os03g47240OsAffx.21108.1.S1_x_at2/113+26681942..26685381expressed protein
LOC_Os03g47246OsAffx.25598.1.S1_x_at7/113+26685956..26686324ACT domain-containing protein, putative
LOC_Os03g47252OsAffx.25598.1.S1_x_at4/113+26687320..26688208hypothetical protein
LOC_Os03g47260NANA3+26689835..26690760expressed protein
LOC_Os03g47270Os.55444.1.S1_at11/113+26695971..26696832expressed protein
LOC_Os03g47280Os.56080.1.S1_at10/113+26701207..26701873VQ motif family protein, expressed
LOC_Os03g47290OsAffx.3540.1.S1_at11/113+26703572..26704006hypothetical protein
LOC_Os03g47300NANA3+26704929..26705603hypothetical protein
LOC_Os03g47310NANA3+26710395..26714888transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47320NANA3+26717451..26720025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.47463.1.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g47330Os.14491.2.S1_x_at3/113+26720252..26722183transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56080.1.S1_at--25--2071Chr03:26701590..26701614 (25 bp)
ACTTCCGGGAGCTCGTGCAGAGGCT
LOC_Os03g47280
Os.56080.1.S1_at--604--4691Chr03:26701447..26701471 (25 bp)
GCGGACATGTTCGACTACGCGTCGT
LOC_Os03g47280
Os.56080.1.S1_at--112--1951Chr03:26701371..26701395 (25 bp)
ACGGCCAGCTCCACCATGGACATGG
LOC_Os03g47280
Os.56080.1.S1_at--1051--8131Chr03:26701354..26701378 (25 bp)
GGACATGGTGCTTTACTGTAGTTTT
LOC_Os03g47280
Os.56080.1.S1_at--751--6811Chr03:26701334..26701358 (25 bp)
GTTTTAGTATAGTCGCTGTCCTTGT
LOC_Os03g47280
Os.56080.1.S1_at--970--4711Chr03:26701320..26701344 (25 bp)
GCTGTCCTTGTAAGATCGAGCCAAA
LOC_Os03g47280
Os.56080.1.S1_at--837--1271Chr03:26701308..26701332 (25 bp)
AGATCGAGCCAAATTTTGCAGTTCG
LOC_Os03g47280
Os.56080.1.S1_at--684--531Chr03:26701283..26701307 (25 bp)
ATCGCTTCTTCTTCCTGTCGTAGAA
LOC_Os03g47280
Os.56080.1.S1_at--358--10551Chr03:26701275..26701299 (25 bp)
TTCTTCCTGTCGTAGAACGCTTGTA
LOC_Os03g47280
Os.56080.1.S1_at--630--5451Chr03:26701261..26701285 (25 bp)
GAACGCTTGTATTAGTTTCTTCAAA
LOC_Os03g47280
Os.56080.1.S1_at--662--2451Chr03:26701207..26701231 (25 bp)
AACACATGAATTAGTTCTCGGCGGC
NONE
Target Sequence 
ACTTCCGGGAGCTCGTGCAGAGGCTCACCGGAGCCGGCACCGCGGCGCCGGCGGTGGCCATGGGCGCGAGCCAGGCTGTG
CCTGCGCCCCCGCCGCCTTACGCGGGTGTCCCGGCGCACGGGCAGAGCGACGCGGCGGCGGCGGCGGACATGTTCGACTA
CGCGTCGTGGTTCTCCGTGCCGCTGCTCAGCCCGGCCTCCATGCCGGCCGCCGGCTACGACGGCCAGCTCCACCATGGAC
ATGGTGCTTTACTGTAGTTTTAGTATAGTCGCTGTCCTTGTAAGATCGAGCCAAATTTTGCAGTTCGATCGCTTCTTCTT
CCTGTCGTAGAACGCTTGTATTAGTTTCTTCAAAAACAACAAATTCAAAGAATTCGATGAATAAACACATGAATTAGTTC
TCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis