Browse Element(s) Details


Os.56116.1.S1_at

Description gb:AK109280.1
DB_XREF= gi:32994489
TID=Os.56116.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B05, full insert sequence.
FL= gb:AK109280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3912011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed
LOC_Os11g39150OsAffx.7351.1.S1_at11/1111+22798773..22802188hypothetical protein
LOC_Os11g39150OsAffx.4334.1.S1_at1/1111+22798773..22802188hypothetical protein
LOC_Os11g39160Os.49419.1.S1_at4/1111+22804542..22812100NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56116.1.S1_at--485--3911Chr11:22783098..22783122 (25 bp)
CTGGCGTTCTTCGATTCATGGGAGG
LOC_Os11g39120
Os.56116.1.S1_at--1035--1551Chr11:22782993..22783017 (25 bp)
AGCTACTTCACGGAGCAGGCGGAGA
LOC_Os11g39120
Os.56116.1.S1_at--64--1291Chr11:22782938..22782962 (25 bp)
AGATCGACTGGACCGGCGTCAAATT
LOC_Os11g39120
Os.56116.1.S1_at--107--2071Chr11:22782888..22782912 (25 bp)
ACTTGCTGTCAACCACTGTGATTTC
LOC_Os11g39120
Os.56116.1.S1_at--8--6351Chr11:22782844..22782868 (25 bp)
GATGCTGCAGAGGACTACTTCTTTA
LOC_Os11g39120
Os.56116.1.S1_at--501--9951Chr11:22782811..22782835 (25 bp)
TACCCAAATGGTCTCAAGCCAGCTT
LOC_Os11g39120
Os.56116.1.S1_at--703--4891Chr11:22782790..22782814 (25 bp)
GCTTAGCTTTTGAGTACTGCCTCAC
LOC_Os11g39120
Os.56116.1.S1_at--719--9171Chr11:22782773..22782797 (25 bp)
TGCCTCACCCTTAGCTACTAAATTA
LOC_Os11g39120
Os.56116.1.S1_at--88--2251Chr11:22782754..22782778 (25 bp)
AAATTACTAGCTCTCTGTCGGGTAG
LOC_Os11g39120
Os.56116.1.S1_at--969--10811Chr11:22782689..22782713 (25 bp)
TTGTGTGATTTGACCGACCCTTATA
LOC_Os11g39120
Os.56116.1.S1_at--658--2771Chr11:22782661..22782685 (25 bp)
AAGACCATGTGGCTTATGCTATGAA
LOC_Os11g39120
Target Sequence 
CTGGCGTTCTTCGATTCATGGGAGGAGGTCAACGACGAGTTCGAGGAGTTCCAGAGGGAGATCCTCCGCGAGGTGAAGGA
GACTGGCCGCTACATGGTCCACCAGAGCTACTTCACGGAGCAGGCGGAGATGCAGGCTCGTATGGAGAAAGAATGGGCCG
AGATCGACTGGACCGGCGTCAAATTCGGCGACTGGGACTACGACGACCCCACTTGCTGTCAACCACTGTGATTTCAGGCT
CGCCCGCTAACTGAGATGCTGCAGAGGACTACTTCTTTACTGTATCTTACCCAAATGGTCTCAAGCCAGCTTAGCTTTTG
AGTACTGCCTCACCCTTAGCTACTAAATTACTAGCTCTCTGTCGGGTAGTAGTATCAGTTATCTATGGTGTTTGCTAGGT
AGTAATGTCTTGTGTGATTTGACCGACCCTTATAAGGAAGACCATGTGGCTTATGCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis