Browse Element(s) Details


Os.56153.1.S1_at

Description gb:AK109454.1
DB_XREF= gi:32994663
TID=Os.56153.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F07, full insert sequence.
FL= gb:AK109454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1223611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56153.1.S1_at--277--9631Chr03:6401269..6401293 (25 bp)
TCATGTCCCCTCGAAGTGTTAGATT
LOC_Os03g12236
Os.56153.1.S1_at--1037--4851Chr03:6401304..6401328 (25 bp)
GCTAGTTTTAGTGTATGCGCAGTTC
LOC_Os03g12236
Os.56153.1.S1_at--956--9151Chr03:6401319..6401343 (25 bp)
TGCGCAGTTCAATTTATCTGGAATT
LOC_Os03g12236
Os.56153.1.S1_at--240--171Chr03:6401330..6401354 (25 bp)
ATTTATCTGGAATTGAACCGGTAGC
LOC_Os03g12236
Os.56153.1.S1_at--323--2611Chr03:6401345..6401369 (25 bp)
AACCGGTAGCGTGATATAGTTGCGA
LOC_Os03g12236
Os.56153.1.S1_at--810--231Chr03:6401360..6401384 (25 bp)
ATAGTTGCGATTGAGTTGGGCCACT
LOC_Os03g12236
Os.56153.1.S1_at--206--10851Chr03:6401375..6401399 (25 bp)
TTGGGCCACTTGCATTATCTGCTTG
LOC_Os03g12236
Os.56153.1.S1_at--606--10131Chr03:6401390..6401414 (25 bp)
TATCTGCTTGTTCCAACCTGGGTAA
LOC_Os03g12236
Os.56153.1.S1_at--637--8631Chr03:6401408..6401432 (25 bp)
TGGGTAATTATCGTCTTCTGCATCC
LOC_Os03g12236
Os.56153.1.S1_at--723--4191Chr03:6401432..6401456 (25 bp)
CCCTGCACAATCCTGGTTACAGTAT
LOC_Os03g12236
Os.56153.1.S1_at--763--7071Chr03:6401482..6401506 (25 bp)
GTAATTCTTGGTAATGTGGATCATG
LOC_Os03g12236
Target Sequence 
TCATGTCCCCTCGAAGTGTTAGATTGTGTGATACTGCTAGTTTTAGTGTATGCGCAGTTCAATTTATCTGGAATTGAACC
GGTAGCGTGATATAGTTGCGATTGAGTTGGGCCACTTGCATTATCTGCTTGTTCCAACCTGGGTAATTATCGTCTTCTGC
ATCCCCTGCACAATCCTGGTTACAGTATATGTTAAAATGAGTAAAATGACTATGTAATTCTTGGTAATGTGGATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis