Browse Element(s) Details


Os.56170.1.S1_at

Description gb:AK109530.1
DB_XREF= gi:32994739
TID=Os.56170.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B05, full insert sequence.
FL= gb:AK109530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3466010/11glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34610NANA6+20125202..20125871expressed protein
LOC_Os06g34620NANA6+20130647..20131171Zinc finger, C3HC4 type family protein
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein
LOC_Os06g34640NANA6+20137223..20137693Zinc finger, C3HC4 type family protein
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56170.1.S1_at--713--851Chr06:20146498..20146522 (25 bp)
ATGGCAGCTGCGTGTTTCCTTCCAG
LOC_Os06g34660
Os.56170.1.S1_at--62--8271Chr06:20144421..20144445 (25 bp)
GGCAGCTTCACAGGAACAACAACTT
LOC_Os06g34660
Os.56170.1.S1_at--85--2471Chr06:20144404..20144428 (25 bp)
AACAACTTATGGTCCAGCTGGTGCA
LOC_Os06g34660
Os.56170.1.S1_at--244--5151Chr06:20144372..20144396 (25 bp)
GCAAAAGTTCTTCCAGGCAACTGAA
LOC_Os06g34660
Os.56170.1.S1_at--606--8231Chr06:20144357..20144381 (25 bp)
GGCAACTGAATTTCTGGTCATTGTT
LOC_Os06g34660
Os.56170.1.S1_at--86--6651Chr06:20144335..20144359 (25 bp)
GTTGTTATGCATATGTCTGTCTGTA
LOC_Os06g34660
Os.56170.1.S1_at--115--8751NONE
TGTAGCATTTTTCGATGCCTTCCCT
NONE
Os.56170.1.S1_at--663--4311Chr06:20144297..20144321 (25 bp)
CCTTCCCTTCTGATACATTTTCATA
LOC_Os06g34660
Os.56170.1.S1_at--731--171Chr06:20144281..20144305 (25 bp)
ATTTTCATAAACTCCTCTCTGCTAG
LOC_Os06g34660
Os.56170.1.S1_at--665--5392Chr06:20144205..20144229 (25 bp)
GAAGCATCATTTCTTTGCAAGTCTG
LOC_Os06g34660
Os.56170.1.S1_at--823--8191Chr06:20144169..20144193 (25 bp)
GGAATACTCTTTTCAAGCTTCCCCT
LOC_Os06g34660
Target Sequence 
ATGGCAGCTGCGTGTTTCCTTCCAGCACATCTCCAAAAAATGGCAGCTTCACAGGAACAACAACTTATGGTCCAGCTGGT
GCAGATTTAAGCAAAAGTTCTTCCAGGCAACTGAATTTCTGGTCATTGTTGTTATGCATATGTCTGTCTGTAGCATTTTT
CGATGCCTTCCCTTCTGATACATTTTCATAAACTCCTCTCTGCTAGTATATGATAAACTACTGGACTGCAGAAATGCAAT
TTGTTGTACTTGTGGTTGAAGCATCATTTCTTTGCAAGTCTGTGTAGAGAAAAGGAATACTCTTTTCAAGCTTCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis