Browse Element(s) Details


Os.56200.1.S1_at

Description gb:AK109603.1
DB_XREF= gi:32994812
TID=Os.56200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E12, full insert sequence.
FL= gb:AK109603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3865011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38590NANA9+22199384..22200076hypothetical protein
LOC_Os09g38600Os.52115.1.S1_at10/119+22201597..22203686expressed protein
LOC_Os09g38610NANA9+22207524..22208021hypothetical protein
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56200.1.S1_at--785--5271Chr09:22225322..22225346 (25 bp)
GAAGGACTGGTCCAACAAGGCCTAA
LOC_Os09g38650
Os.56200.1.S1_at--837--8131Chr09:22225228..22225252 (25 bp)
GGCACCAGGCGACGAAGGATTCCAT
LOC_Os09g38650
Os.56200.1.S1_at--630--2911Chr09:22225214..22225238 (25 bp)
AAGGATTCCATGGTCTCTGTGGTCC
LOC_Os09g38650
Os.56200.1.S1_at--582--7251Chr09:22225193..22225217 (25 bp)
GTCCTGATTCAGGTGAGGGATCCCG
LOC_Os09g38650
Os.56200.1.S1_at--1148--7111Chr09:22225130..22225154 (25 bp)
GTCATGGAGGCATCCCTGGAGAAGA
LOC_Os09g38650
Os.56200.1.S1_at--1076--7971Chr09:22225075..22225099 (25 bp)
GGATGCACGTCGCAGGGATCCTCTT
LOC_Os09g38650
Os.56200.1.S1_at--981--7971Chr09:22225060..22225084 (25 bp)
GGATCCTCTTCGGTGCAAGCAGCAA
LOC_Os09g38650
Os.56200.1.S1_at--687--3971Chr09:22224923..22224947 (25 bp)
CGGTGCGGCTTTGTTCGGAACACAA
LOC_Os09g38650
Os.56200.1.S1_at--299--10291Chr09:22224891..22224915 (25 bp)
TTTCCGACGGTAGAGATTGGCATTC
LOC_Os09g38650
Os.56200.1.S1_at--994--1571Chr09:22224845..22224869 (25 bp)
AGCTCAATCAGCATTGTCCTGTTCT
LOC_Os09g38650
Os.56200.1.S1_at--681--7251Chr09:22224830..22224854 (25 bp)
GTCCTGTTCTTAGCACGGGAGCAGA
LOC_Os09g38650
Target Sequence 
GAAGGACTGGTCCAACAAGGCCTAAAGATTCGCATGGCCTCGACGGCTGACTCTGCCTCGTCCACGGCTGCCGGCGACGA
CGACGGCGACCGGAGGCACCAGGCGACGAAGGATTCCATGGTCTCTGTGGTCCTGATTCAGGTGAGGGATCCCGAGCAAG
GGTACGCCGCCATTGGTGACCCCATGATCGGGGTCATGGAGGCATCCCTGGAGAAGAAGGATGGCAGGGTGAAGCTGGAG
ATGCAGGGGATGCACGTCGCAGGGATCCTCTTCGGTGCAAGCAGCAAGGGAAGGAGTAATGGCAGAGCCATGATGTGGAG
TGCTTGCTTGGGACAGTGCAAGGGGTCTCACAATGGCCGCCGCGGCGGCGGTGGCGGCGCCGGCGCCGGTGATGTCTGCC
GGTGCGGCTTTGTTCGGAACACAAATCGTGTTTTCCGACGGTAGAGATTGGCATTCTTGGTATGTCTAGTAAAGTAAAGC
TCAATCAGCATTGTCCTGTTCTTAGCACGGGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis