Browse Element(s) Details


Os.56212.1.S1_at

Description gb:AK109622.1
DB_XREF= gi:32994831
TID=Os.56212.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A09, full insert sequence.
FL= gb:AK109622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4695011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56212.1.S1_at--125--4231Chr04:27618000..27618024 (25 bp)
CCGTTGCCGATCTGCTTGGAAGGGA
LOC_Os04g46950
Os.56212.1.S1_at--782--2611Chr04:27617868..27617892 (25 bp)
AACCGCCGAGTGATCTAGTCTACAA
LOC_Os04g46950
Os.56212.1.S1_at--784--831Chr04:27617828..27617852 (25 bp)
ATGGATGCCTTGTGTGCGGTTTTGC
LOC_Os04g46950
Os.56212.1.S1_at--1128--8611Chr04:27617759..27617783 (25 bp)
TGGGTGTACTTTCTCCTATGTGGAG
LOC_Os04g46950
Os.56212.1.S1_at--580--9111Chr04:27617726..27617750 (25 bp)
TGCTGGGCCGAAAATCCTTTGTTTG
LOC_Os04g46950
Os.56212.1.S1_at--1122--8271Chr04:27617701..27617725 (25 bp)
GGCTTTATTAGGCTTCGGACACGAT
LOC_Os04g46950
Os.56212.1.S1_at--642--3251Chr04:27617669..27617693 (25 bp)
CAACGTAGGTGGTCTGGTCTGGTCT
LOC_Os04g46950
Os.56212.1.S1_at--245--7791Chr04:27617649..27617673 (25 bp)
GGTCTAGCCGTGTGCCTTTTAACAG
LOC_Os04g46950
Os.56212.1.S1_at--386--3691Chr04:27617620..27617644 (25 bp)
TAACGTCCAATTGTAGGTCCTTTGT
LOC_Os04g46950
Os.56212.1.S1_at--868--7211Chr04:27617589..27617613 (25 bp)
GTCGAGTTTTGAATCGTATCCCTCA
LOC_Os04g46950
Os.56212.1.S1_at--1019--4631Chr04:27617544..27617568 (25 bp)
GCGTAGCCCAACTAGCAAAACCTAT
LOC_Os04g46950
Target Sequence 
CCGTTGCCGATCTGCTTGGAAGGGAGGGGATAGAAAGAAGTGTGGGAAAATAGACTAATGTTTCAATGACATGTGGGTCC
CACATGGGTCTCACGCTGACTCAGCCACCACTTCGGACAAAACCAGGGTTAAAACCGCCGAGTGATCTAGTCTACAATGG
TTTTGTAAGTTGATGGATGCCTTGTGTGCGGTTTTGCGGTTGGGGGACGATTTTGTAATTAGATGACAAGTTGAGGGACC
TTGGGTGTACTTTCTCCTATGTGGAGCTAGGCTGTGCTGGGCCGAAAATCCTTTGTTTGGGCTTTATTAGGCTTCGGACA
CGATGAACGATCAACGTAGGTGGTCTGGTCTGGTCTAGCCGTGTGCCTTTTAACAGGGGATAACGTCCAATTGTAGGTCC
TTTGTCTAGGAGTCGAGTTTTGAATCGTATCCCTCAATTGTAAAACCAGCTATAATGCGTAGCCCAACTAGCAAAACCTA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis