Browse Element(s) Details


Os.56221.1.S1_at

Description gb:AK109636.1
DB_XREF= gi:32994845
TID=Os.56221.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D11, full insert sequence.
FL= gb:AK109636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39230OsAffx.7352.1.S1_at11/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.2.S1_x_at9/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.3.S1_x_at8/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.5.S1_x_at6/1111+22859810..22864593hypothetical protein
LOC_Os11g39230Os.41695.4.S1_x_at1/1111+22859810..22864593hypothetical protein
LOC_Os11g39240NANA11+22865855..22866779hypothetical protein
LOC_Os11g39250Os.27343.1.A1_at11/1111+22867253..22874086transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56221.1.S1_at--672--431Chr11:22889858..22889882 (25 bp)
ATCTTATTTACCAGCATCTTCTCAA
LOC_Os11g39280
Os.56221.1.S1_at--535--3195Chr11:22889880..22889904 (25 bp)
CAATGCACAAAGTAGCCTATCAGGC
LOC_Os11g39280
Os.56221.1.S1_at--212--411Chr11:22889898..22889922 (25 bp)
ATCAGGCTTGGTACCGTAGTATACA
LOC_Os11g39280
Os.56221.1.S1_at--1138--1191Chr11:22889915..22889939 (25 bp)
AGTATACATATTTTAGAGGTCCCTA
LOC_Os11g39280
Os.56221.1.S1_at--559--7153Chr11:22889933..22889957 (25 bp)
GTCCCTAATTTTTGGAGGCCCAGTG
LOC_Os11g39280
Os.56221.1.S1_at--49--10397Chr11:22889942..22889966 (25 bp)
TTTTGGAGGCCCAGTGCGGTCGCAC
LOC_Os11g39280
Os.56221.1.S1_at--365--2191Chr11:22890027..22890051 (25 bp)
ACACATGTGTTATAGTCGGTTATCA
LOC_Os11g39280
Os.56221.1.S1_at--1111--10051Chr11:22890039..22890063 (25 bp)
TAGTCGGTTATCAGTGCGCTACACA
LOC_Os11g39280
Os.56221.1.S1_at--415--1091Chr11:22890051..22890075 (25 bp)
AGTGCGCTACACATTAAGGCCCCTT
LOC_Os11g39280
Os.56221.1.S1_at--922--3531Chr11:22890062..22890086 (25 bp)
CATTAAGGCCCCTTTTCATTAGGAG
LOC_Os11g39280
Os.56221.1.S1_at--529--10091Chr11:22890253..22890277 (25 bp)
TATGTTTTTTCCTACGGTTCGATCA
LOC_Os11g39280
Target Sequence 
ATCTTATTTACCAGCATCTTCTCAATGCACAAAGTAGCCTATCAGGCTTGGTACCGTAGTATACATATTTTAGAGGTCCC
TAATTTTTGGAGGCCCAGTGCGGTCGCACTTCCCGCACTGCCCCAGGGCTGGCCCTGAGCAGAAGAAGAGCGTATATCAG
TATTACAAAACACATGTGTTATAGTCGGTTATCAGTGCGCTACACATTAAGGCCCCTTTTCATTAGGAGGAAACACATAT
AGAAATTTTGAAGGATTTCAATCCCATAGAAAAAATTCCTATAAACATAAATTCCTATGGAAATGGACAATCCTATAAAG
ATTTTGGAGAAAACTTATCAAGAGCTCAAAGCTCTTGGAAAATTTCCTTTGAGTCTATCTCTGTCATCTGATTCCTATGT
TTTTTCCTACGGTTCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis