Browse Element(s) Details


Os.56234.1.S1_at

Description gb:AK109664.1
DB_XREF= gi:32994873
TID=Os.56234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E03, full insert sequence.
FL= gb:AK109664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3257011/11Chloroplastic quinone-oxidoreductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56234.1.S1_at--1010--4511Chr09:19444080..19444104 (25 bp)
GCCGCTGTTCGTGTCGCCGACGAAG
LOC_Os09g32570
Os.56234.1.S1_at--739--2491Chr09:19444256..19444280 (25 bp)
AACAGTGAGTGTGAGCTCGACGGAT
LOC_Os09g32570
Os.56234.1.S1_at--617--1591Chr09:19444269..19444293 (25 bp)
AGCTCGACGGATTTGTGGCCTGGAA
LOC_Os09g32570
Os.56234.1.S1_at--998--4071Chr09:19444273..19444297 (25 bp)
CGACGGATTTGTGGCCTGGAAGAAC
LOC_Os09g32570
Os.56234.1.S1_at--734--2811Chr09:19444303..19444327 (25 bp)
AAGATACGATTTTGTAGCGTGCAAC
LOC_Os09g32570
Os.56234.1.S1_at--146--6551Chr09:19444310..19444334 (25 bp)
GATTTTGTAGCGTGCAACTGTGCAT
LOC_Os09g32570
Os.56234.1.S1_at--1127--1951Chr09:19444326..19444350 (25 bp)
ACTGTGCATGTATAGATGTACTGCT
LOC_Os09g32570
Os.56234.1.S1_at--819--6271Chr09:19444340..19444364 (25 bp)
GATGTACTGCTTGAGTCTTTTATTG
LOC_Os09g32570
Os.56234.1.S1_at--355--7151Chr09:19444354..19444378 (25 bp)
GTCTTTTATTGACTCTCATCGTTTG
LOC_Os09g32570
Os.56234.1.S1_at--24--10771Chr09:19444362..19444386 (25 bp)
TTGACTCTCATCGTTTGTTTGTTTG
LOC_Os09g32570
Os.56234.1.S1_at--898--9992Chr09:19444388..19444412 (25 bp)
TAGCTTATAAGCCACAATCATCAAA
LOC_Os09g32570
Target Sequence 
GCCGCTGTTCGTGTCGCCGACGAAGGAGGACATGGAGCTCGTCGCCGGCATGGTGGCGGAAGGGAAGCTCAGGGCGGTGA
TCGAGTCGAGGCACCCGCTGAGCAGGGCGGAGGAGGGCTGGGCCAGGAGCATGGCGGGGCACGCCACCGGCAAGATCATC
GTCGAGATGGGAGACGAACAGTGAGTGTGAGCTCGACGGATTTGTGGCCTGGAAGAACAGAATAAGATACGATTTTGTAG
CGTGCAACTGTGCATGTATAGATGTACTGCTTGAGTCTTTTATTGACTCTCATCGTTTGTTTGTTTGTTAGCTTATAAGC
CACAATCATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis