Browse Element(s) Details


Os.56263.1.S1_at

Description gb:AK109713.1
DB_XREF= gi:32994922
TID=Os.56263.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H04, full insert sequence.
FL= gb:AK109713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1134011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11300NANA11+6265679..6269335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11310NANA11+6270916..6271251hypothetical protein
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005516molecular_functioncalmodulin binding
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56263.1.S1_at--1157--6051Chr11:6285958..6285982 (25 bp)
GAGTTGCTGCAGACTTGTGCATCAC
LOC_Os11g11340
Os.56263.1.S1_at--625--391Chr11:6285978..6286002 (25 bp)
ATCACGCTGGCTCAGTGGTAGGCAC
LOC_Os11g11340
Os.56263.1.S1_at--600--8951Chr11:6286007..6286031 (25 bp)
TGAAAGCAAACTATGTTCCCCTCCT
LOC_Os11g11340
Os.56263.1.S1_at--640--2831Chr11:6286073..6286097 (25 bp)
AAGTAGATGGTTCTGCTCCTGATGT
LOC_Os11g11340
Os.56263.1.S1_at--173--2331Chr11:6286189..6286213 (25 bp)
AAAGTGCATCTTTCTGGTCCAGTCT
LOC_Os11g11340
Os.56263.1.S1_at--183--6591Chr11:6286224..6286248 (25 bp)
GATTGCCTTTGTTAAGCCAGGCCCA
LOC_Os11g11340
Os.56263.1.S1_at--83--1491Chr11:6286251..6286275 (25 bp)
AGCACACAATTCCTTTCGTACTGAT
LOC_Os11g11340
Os.56263.1.S1_at--196--6051Chr11:6286286..6286310 (25 bp)
GAGATTTCAATCACGGTCCAAGACT
LOC_Os11g11340
Os.56263.1.S1_at--336--1331Chr11:6286497..6286521 (25 bp)
AGAGGTATCCTTCTTTCTGGTCCAC
LOC_Os11g11340
Os.56263.1.S1_at--555--1071Chr11:6286529..6286553 (25 bp)
AGGGAAAACCTCTCTTGCTACTTCT
LOC_Os11g11340
Os.56263.1.S1_at--98--10731Chr11:6286543..6286567 (25 bp)
TTGCTACTTCTTGTGCCTATGATGA
LOC_Os11g11340
Target Sequence 
GAGTTGCTGCAGACTTGTGCATCACGCTGGCTCAGTGGTAGGCACCTACTGAAAGCAAACTATGTTCCCCTCCTGATGTG
TGGGAAATTGTCCATGTTTATTGTTATGGGAGCAGAAGTAGATGGTTCTGCTCCTGATGTGGTGCATGATAAAGATAAGT
TACCGTCTAATGAAGAGATTTCTGGTAAATTTGGGGAAGCGCCTGTTTCATTCCTTGTTGACAGAACCACGAAAGTGCAT
CTTTCTGGTCCAGTCTGCTCAGAGGAGATTGCCTTTGTTAAGCCAGGCCCATCAGCACACAATTCCTTTCGTACTGATGC
AAGAAACGGAGATTTCAATCACGGTCCAAGACTTGGTGGGCTATCCAAAGAATCAAAAGAAATAAAAGAAATCATTTCAT
TTTCAATCAAAGACCAAATTGGCTTGCAAAGGGTCAAAGATAACCTCTGGTACAGAGGTATCCTTCTTTCTGGTCCACCT
GGAACAGGGAAAACCTCTCTTGCTACTTCTTGTGCCTATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis