Browse Element(s) Details


Os.56305.1.S1_at

Description gb:AK109815.1
DB_XREF= gi:32995024
TID=Os.56305.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-H07, full insert sequence.
FL= gb:AK109815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0740011/11expressed protein
LOC_Os11g073901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein
LOC_Os11g07410OsAffx.30861.1.S1_at11/1111+3728371..3728615hypothetical protein
LOC_Os11g07420OsAffx.30862.1.S1_at11/1111+3729946..3731097hypothetical protein
LOC_Os11g07430Os.53470.1.S1_at11/1111+3733025..3734936expressed protein
LOC_Os11g07440Os.47344.1.A1_at11/1111+3735532..3739424Neutral/alkaline invertase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.56305.1.S1_at--637--231Chr11:3718267..3718291 (25 bp)
ATATTTCCCAACGAGAGCCATCTTA
LOC_Os11g07400
Os.56305.1.S1_at--1115--3111Chr11:3718220..3718244 (25 bp)
AATTTTGCTACAAAGCCACCACCGG
LOC_Os11g07400
Os.56305.1.S1_at--665--4431Chr11:3718196..3718220 (25 bp)
GCCATCATCTGCGAGGCAACGACGA
LOC_Os11g07400
Os.56305.1.S1_at--689--7831Chr11:3718151..3718175 (25 bp)
GGTAATAATCTGTCGCAATCTTTGC
LOC_Os11g07400
Os.56305.1.S1_at--809--5191Chr11:3718137..3718161 (25 bp)
GCAATCTTTGCCATCTGCCAAACAT
LOC_Os11g07400
Os.56305.1.S1_at--13--9212Chr11:3718122..3718146 (25 bp)
TGCCAAACATCTGCAGGTGTCAAGG
LOC_Os11g07400
Os.56305.1.S1_at--203--2791Chr11:3718066..3718090 (25 bp)
AAGAGATTCCTGAGCTTTCTCGCGA
LOC_Os11g07400
Os.56305.1.S1_at--138--1571Chr11:3718054..3718078 (25 bp)
AGCTTTCTCGCGATGATTTGCTGAA
LOC_Os11g07400
Os.56305.1.S1_at--1036--8711Chr11:3717925..3717950 (25 bp)
TGTCGAGATTGTCCCGTTGCAGTGC
LOC_Os11g07400
Os.56305.1.S1_at--477--7331Chr11:3717904..3717928 (25 bp)
GTGCATGTACAACTGATGGCCTATA
LOC_Os11g07400
Os.56305.1.S1_at--825--7931Chr11:3717830..3717854 (25 bp)
GGATTAACTGTGCTAATTCTGCTGA
LOC_Os11g07400
Target Sequence
ATATTTCCCAACGAGAGCCATCTTATGGACACACTTACATTCCAAACAATTTTGCTACAAAGCCACCACCGGCCATCATC
TGCGAGGCAACGACGACGATCACAACCGAAATCAACGGTAATAATCTGTCGCAATCTTTGCCATCTGCCAAACATCTGCA
GGTGTCAAGGATGGCTCCTGAGGAGATATTGGTAGCACTTGAAGAGATTCCTGAGCTTTCTCGCGATGATTTGCTGAAAG
CGTATAGTATTCTTTGCCGTGACAATGGCCGCCTATTTAGGTCTCTTCTTGGGCTCCCAATGAGTCTGAGGAAGAAGTGG
CTGTTGATAGAAATTAAGGCTTGTCGAGATTGTCCCGTTGCAGTGCATGTACAACTGATGGCCTATAACATGATTGATTA
AAATATTTGTTATAGTGGTACTTGTATACACTTGTGGGATTAACTGTGCTAATTCTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis