Browse Element(s) Details


Os.56382.1.S1_at

Description gb:AK109954.1
DB_XREF= gi:32995163
TID=Os.56382.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-159-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A10, full insert sequence.
FL= gb:AK109954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0183011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed
LOC_Os08g01850Os.5795.1.S1_at11/118+513314..517530hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56382.1.S1_at--796--1471Chr08:493103..493127 (25 bp)
AGCCCCTTCCACACGAGGGAGTTCG
LOC_Os08g01830
Os.56382.1.S1_at--18--4271Chr08:493128..493152 (25 bp)
CCGGCGTCGGACATGGCAGGTCAAA
LOC_Os08g01830
Os.56382.1.S1_at--571--8251Chr08:493142..493166 (25 bp)
GGCAGGTCAAACTCAGCAATGTAAA
LOC_Os08g01830
Os.56382.1.S1_at--377--10351Chr08:493226..493250 (25 bp)
TTTTAATTAGTTTCCACGGTTGCTG
LOC_Os08g01830
Os.56382.1.S1_at--11--6691Chr08:493266..493290 (25 bp)
GTTGCTGTGCATAAACATTTTTCAA
LOC_Os08g01830
Os.56382.1.S1_at--646--951Chr08:493356..493380 (25 bp)
AGGAGAGTTTTTGATTGCTTTTGCT
LOC_Os08g01830
Os.56382.1.S1_at--381--6591Chr08:493368..493392 (25 bp)
GATTGCTTTTGCTCTGTGAACAAAA
LOC_Os08g01830
Os.56382.1.S1_at--459--1171Chr08:493499..493523 (25 bp)
AGTACAATCTTGTTTTTTCTTCTGT
LOC_Os08g01830
Os.56382.1.S1_at--388--151Chr08:493578..493602 (25 bp)
ATTATTAATTTGTGGCCTTGTGAGA
LOC_Os08g01830
Os.56382.1.S1_at--710--7511Chr08:493605..493629 (25 bp)
GTGGAGATGCAACAACTGTACTTCT
LOC_Os08g01830
Os.56382.1.S1_at--738--3871Chr08:493620..493644 (25 bp)
CTGTACTTCTTCCAACAAACTGCTT
LOC_Os08g01830
Target Sequence 
AGCCCCTTCCACACGAGGGAGTTCGCCGGCGTCGGACATGGCAGGTCAAACTCAGCAATGTAAAAAAAAAAACAAACGAG
TTTTATTTTTTTATCCTTTTTTTATTTATTTTCTTTGTTTTGTTTTAATTAGTTTCCACGGTTGCTGGAATAGGATGAAT
TAGTTGCTGTGCATAAACATTTTTCAAAGAGGAAAAAAAAGATACTGAGAGGGAGTATTCATTTTGATGTTGATTGTTAC
TTGAATTAGTCTAGGAGAGTTTTTGATTGCTTTTGCTCTGTGAACAAAATTCATAAGAGTTTGACAAAATCTAACATGTA
CGTTGTATATCAAGATTTATTGACACAACATAATAATATAATAATAATACTAGTTGGAGTAGTGGGTGGTTTGTAAGTAC
AATCTTGTTTTTTCTTCTGTTTTGATTTGTTAGCTTAGAAATTTTCGGAGGGTTGGTAGGTTAGATTAGACAAAATTATT
AATTTGTGGCCTTGTGAGAGTGTGGAGATGCAACAACTGTACTTCTTCCAACAAACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis