Browse Element(s) Details


Os.5641.1.S1_a_at

Description gb:AK060828.1
DB_XREF= gi:32970846
TID=Os.5641.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C01, full insert sequence.
FL= gb:AK060828.1 gb:AK070022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5238011/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5641.1.S1_a_at--668--1851Chr04:30900920..30900944 (25 bp)
ACGACACCGAATTGTTCCTCTTCTG
LOC_Os04g52380
Os.5641.1.S1_a_at--1032--6691Chr04:30900907..30900931 (25 bp)
GTTCCTCTTCTGCTTATGATGGTAG
LOC_Os04g52380
Os.5641.1.S1_a_at--779--6931Chr04:30900886..30900910 (25 bp)
GTAGTAGAAACCATGCGCAAGTCGA
LOC_Os04g52380
Os.5641.1.S1_a_at--933--2831Chr04:30900868..30900892 (25 bp)
AAGTCGACCATGTCGGCATGCCAAT
LOC_Os04g52380
Os.5641.1.S1_a_at--1127--9631Chr04:30900833..30900857 (25 bp)
TCAGATAAGTTCTACGGCAGTGGCT
LOC_Os04g52380
Os.5641.1.S1_a_at--890--791Chr04:30900775..30900799 (25 bp)
ATGTGGCAAATCTTCTCACCTGCAA
LOC_Os04g52380
Os.5641.1.S1_a_at--564--2311Chr04:30900730..30900754 (25 bp)
AAAGACTAACCAGCCTCACAGGCTT
LOC_Os04g52380
Os.5641.1.S1_a_at--1131--8271Chr04:30900710..30900734 (25 bp)
GGCTTCTTAGAACTCCTCATTAGGT
LOC_Os04g52380
Os.5641.1.S1_a_at--191--2571Chr04:30900640..30900664 (25 bp)
AACTGTAGTAGATGGTTCGTCACTA
LOC_Os04g52380
Os.5641.1.S1_a_at--722--3551Chr04:30900585..30900609 (25 bp)
CATCTTATGCTAAACTGGACACTAT
LOC_Os04g52380
Os.5641.1.S1_a_at--79--8151Chr04:30900569..30900593 (25 bp)
GGACACTATTTTCTGTCTGTCTGAA
LOC_Os04g52380
Target Sequence 
ACGACACCGAATTGTTCCTCTTCTGCTTATGATGGTAGTAGAAACCATGCGCAAGTCGACCATGTCGGCATGCCAATGCC
AAGGCCATCAGATAAGTTCTACGGCAGTGGCTGGTNTTCCTCCCCAGTGAGTTCCATCTGGGGAATATGTGGCAAATCTT
CTCACCTGCAAAANCAAATCAGAAGAAAGCCAAAGACTAACCAGCCTCACAGGCTTCTTAGAACTCCTCATTAGGTACCT
TGACAAGGATGCATGTTGCAAGAAAGACTGTATCTTGTTGGAACTGTAGTAGATGGTTCGTCACTAATAAGTAATAATAA
CCTAATAATATACCCCCATCTTATGCTAAACTGGACACTATTTTCTGTCTGTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5641.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis