Browse Element(s) Details


Os.5646.1.S1_at

Description gb:AK106115.1
DB_XREF= gi:32991324
TID=Os.5646.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E03, full insert sequence.
FL= gb:AK106115.1 gb:AK060938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g263002/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26260OsAffx.30035.1.S1_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26260OsAffx.30035.1.S1_x_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26270OsAffx.6405.1.S1_at11/119+15873527..15875552hypothetical protein
LOC_Os09g26270OsAffx.31003.1.S1_x_at1/119+15873527..15875552hypothetical protein
LOC_Os09g26280NANA9+15879528..15880667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5646.1.S1_at--400--5771Chr09:15890845..15890869 (25 bp)
GACGTTGGTTGATTCCGCCATGGTA
LOC_Os09g26300
Os.5646.1.S1_at--239--4431Chr09:15890829..15890853 (25 bp)
GCCATGGTAGCGTACGCCATTCACA
LOC_Os09g26300
Os.5646.1.S1_at--541--431NONE
ATCTTTTTACTACGCTTAGACCAAT
NONE
Os.5646.1.S1_at--475--2811NONE
AAGATATTCCGATTCCGAGCACAAT
NONE
Os.5646.1.S1_at--610--4051NONE
CGAGCACAATTATAACCCCACTTTA
NONE
Os.5646.1.S1_at--257--2231NONE
AAATACCCCGTCATATAAGCTCCTA
NONE
Os.5646.1.S1_at--974--5571NONE
GAAATCCCCTATATATACCCTAATA
NONE
Os.5646.1.S1_at--421--311NONE
ATACCCTAATAATCCACCATCGTAG
NONE
Os.5646.1.S1_at--548--6951NONE
GTAGAAAACACCCATATTCACCTCA
NONE
Os.5646.1.S1_at--225--7831NONE
GGTACTAATACAGAGGGCCACCTCG
NONE
Os.5646.1.S1_at--827--7091NONE
GTCACACCTATCCACTATATGTCAT
NONE
Target Sequence 
GACGTTGGTTGATTCCGCCATGGTAGCGTACGCCATTCACATNCTTTCTCTGGAANNNNNNANNNANNAANNNNNNANNN
NAACACCAAAAAACAACAACAACAAAAAAAAAAATAAAAACAACAACAAAAAAAACAAAAACAAAAAAAAAAATCTTTTT
ACTACGCTTAGACCAATATATCTAAAAATCTGACCCAAGATATTCCGATTCCGAGCACAATTATAACCCCACTTTAACCA
AATACCCCGTCATATAAGCTCCTATAAAAAATCTATGGCACCGATTAATAACAATAATTACATTGAAATCCCCTATATAT
ACCCTAATAATCCACCATCGTAGAAAACACCCATATTCACCTCATGGTACTAATACAGAGGGCCACCTCGTCACACCTAT
CCACTATATGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis