Browse Element(s) Details


Os.5660.1.S1_at

Description gb:AK105618.1
DB_XREF= gi:32990827
TID=Os.5660.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.5660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C01, full insert sequence.
FL= gb:AK105618.1 gb:AK060660.1 gb:AK059083.1 gb:AK069689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0417011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04100NANA5+1820877..1821560hypothetical protein
LOC_Os05g04110NANA5+1822165..1822578hypothetical protein
LOC_Os05g04120OsAffx.26723.1.S1_x_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.26723.1.S1_at11/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04120OsAffx.4836.1.S1_at2/115+1824122..1826779Ferroportin1 family protein
LOC_Os05g04130NANA5+1827224..1827961hypothetical protein
LOC_Os05g04140NANA5+1829561..1829893hypothetical protein
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5660.1.S1_at--1148--10171Chr05:1845981..1846005 (25 bp)
TATATGTTTTCCCTCCAACCGTTGA
LOC_Os05g04170
Os.5660.1.S1_at--250--8271Chr05:1845818..1845842 (25 bp)
GGCAGTAGTTAATCCACATGAAGAG
LOC_Os05g04170
Os.5660.1.S1_at--508--331Chr05:1845773..1845797 (25 bp)
ATCAAATGGCTGCAAGGGTTCTTTT
LOC_Os05g04170
Os.5660.1.S1_at--299--5291Chr05:1845730..1845754 (25 bp)
GAAGGCCTTAAAGAGCATATCCTGA
LOC_Os05g04170
Os.5660.1.S1_at--432--10151Chr05:1845713..1845737 (25 bp)
TATCCTGAAAGAGCTGCAATCTGTT
LOC_Os05g04170
Os.5660.1.S1_at--498--7751Chr05:1845436..1845460 (25 bp)
GGTGTAATATTGGACCCTATTCCTT
LOC_Os05g04170
Os.5660.1.S1_at--821--8111Chr05:1845426..1845450 (25 bp)
TGGACCCTATTCCTTTTGACCTTGA
LOC_Os05g04170
Os.5660.1.S1_at--371--2291Chr05:1845402..1845426 (25 bp)
AAAGGGATTTGGTGACTGCAACAAT
LOC_Os05g04170
Os.5660.1.S1_at--655--6131Chr05:1845193..1845217 (25 bp)
GAGGGTTGCCGCCAAATCAAAGTAA
LOC_Os05g04170
Os.5660.1.S1_at--281--6451Chr05:1845102..1845126 (25 bp)
GATAATGGATATCGTTCCGGCCTCT
LOC_Os05g04170
Os.5660.1.S1_at--56--6711Chr05:1845089..1845113 (25 bp)
GTTCCGGCCTCTACATGTAAATTTT
LOC_Os05g04170
Target Sequence 
TATATGTTTTCCCTCCAACCGTTGAAGATGTCTGGGTATATGGGGACAGCTTCAGATCAATGTTAGTGGCAGTAGTTAAT
CCACATGAAGAGAACACCATGAAGTGGGCAGAATCAAATGGCTGCAAGGGTTCTTTTGCTGAAATATGCAAGTCTGAAGG
CCTTAAAGAGCATATCCTGAAAGAGCTGCAATCTGTTGCAGCAAAGAACAAGCTACGGGGATTTGAGTATGTCAAAGGTG
TAATATTGGACCCTATTCCTTTTGACCTTGAAAGGGATTTGGTGACTGCAACAATGAAAAAGAAAAGAAACAACATGCTA
AAATATTACAAGCCTGAGATTGAGAAAGTATACCAAAAACTGGAGGAACAGAGGGTTGCCGCCAAATCAAAGTAAAGAAA
TATGTTCCCTTTGAACACTAAATGAAAAGCTAGAATGCCATTGTAAATTTTTCAATTTTTAGATAATGGATATCGTTCCG
GCCTCTACATGTAAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis