Browse Element(s) Details


Os.56601.1.S1_at

Description gb:AK110196.1
DB_XREF= gi:32995405
TID=Os.56601.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-162-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-162-B01, full insert sequence.
FL= gb:AK110196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4403011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein
LOC_Os05g43990NANA5+25508699..25512244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein
LOC_Os05g44030Os.56601.1.S1_at11/115+25529809..25535556Protein kinase domain containing protein, expressed
LOC_Os05g44050Os.12305.1.S1_at11/115+25537349..25540085Ras-related protein Rab7, putative, expressed
LOC_Os05g44060Os.56018.1.S1_at11/115+25540820..25541662expressed protein
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56601.1.S1_at--700--4531Chr05:25535048..25535072 (25 bp)
GCCGCCAAGCCGATGAGCAGACGAA
LOC_Os05g44030
Os.56601.1.S1_at--908--6411Chr05:25535104..25535128 (25 bp)
GATCTCTCTTTTTCACCGGTGGTAA
LOC_Os05g44030
Os.56601.1.S1_at--701--3391Chr05:25535178..25535202 (25 bp)
CAGCTCATTTTTTCTTCGGTTTTAG
LOC_Os05g44030
Os.56601.1.S1_at--704--6531Chr05:25535230..25535254 (25 bp)
GATTAATTTCGCACTAAGGGCCTGT
LOC_Os05g44030
Os.56601.1.S1_at--398--3732Chr05:25535243..25535267 (25 bp)
CTAAGGGCCTGTTCATTTTATCAAA
LOC_Os05g44030
Os.56601.1.S1_at--886--6551Chr05:25535366..25535390 (25 bp)
GATTAGCAGTCAACGTGAACCACAT
LOC_Os05g44030
Os.56601.1.S1_at--689--6831Chr05:25535431..25535455 (25 bp)
GTTTCTTCCATTTGTTAGGTTGTCA
LOC_Os05g44030
Os.56601.1.S1_at--17--7911Chr05:25535448..25535472 (25 bp)
GGTTGTCAATACACCTGTCCTTGAG
LOC_Os05g44030
Os.56601.1.S1_at--101--371Chr05:25535487..25535511 (25 bp)
ATAATTATCATCCACGCCTCTGCTA
LOC_Os05g44030
Os.56601.1.S1_at--525--10171Chr05:25535510..25535534 (25 bp)
TATCAGTCACTATCATTGGTCATGC
LOC_Os05g44030
Os.56601.1.S1_at--906--8592Chr05:25535526..25535550 (25 bp)
TGGTCATGCAACACAAGCGTACGAT
LOC_Os05g44030
Target Sequence 
GCCGCCAAGCCGATGAGCAGACGAACACGCCTCGGCCGCTTTCCGTGAGCGCACTGGATCTCTCTTTTTCACCGGTGGTA
AGTGGTATAATTGTACATGCGTAAAAGTGGCTAATAGTGGATGAATTTTTCAGCTCATTTTTTCTTCGGTTTTAGCAAGG
TTTTGTCTGAATTTATTGTCGCGATTAATTTCGCACTAAGGGCCTGTTCATTTTATCAAATTTTGGCAATACTAAATTTT
AACAACTTTACCAAAATTTGATAAGGTTGAAAATGACATCAAAGTGAACAGGCCCTAAACGAAAAGAGAGCAAAGTTGGA
TTAGCAGTCAACGTGAACCACATGGGACGGATCAGTGATGAGTGAGCTGTACAGAACTTTCATGTTTCTTCCATTTGTTA
GGTTGTCAATACACCTGTCCTTGAGAAGATGCCATGTGGATAATTATCATCCACGCCTCTGCTATCAGTCACTATCATTG
GTCATGCAACACAAGCGTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis