Browse Element(s) Details


Os.56824.1.S1_at

Description gb:AK110462.1
DB_XREF= gi:32995671
TID=Os.56824.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-F12, full insert sequence.
FL= gb:AK110462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4775010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47710OsAffx.15975.1.S1_at10/116+28871389..28872807expressed protein
LOC_Os06g47720NANA6+28873840..28877070Leucine Rich Repeat family protein
LOC_Os06g47730Os.49985.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730OsAffx.20303.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47740NANA6+28887961..28891152Leucine Rich Repeat family protein
LOC_Os06g47750Os.56824.1.S1_at10/116+28897443..28900945Leucine Rich Repeat family protein, expressed
LOC_Os06g47760Os.54008.1.S1_at11/116+28904579..28908026Leucine Rich Repeat family protein, expressed
LOC_Os06g47770Os.49740.1.S1_at10/116+28909277..28913729expressed protein
LOC_Os06g47780OsAffx.28150.1.S1_x_at1/116+28917721..28919038hypothetical protein
LOC_Os06g47790Os.12652.1.S1_at11/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47790OsAffx.28152.1.S1_s_at1/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47800Os.17058.1.S1_at11/116+28925199..28929068NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56824.1.S1_at--679--5871Chr06:28897643..28897667 (25 bp)
GAGCCGGCCGGCGATACAGGACATT
LOC_Os06g47750
Os.56824.1.S1_at--122--6791Chr06:28897618..28897642 (25 bp)
GTTAGTTGGCTGGACAACGTCGAAT
LOC_Os06g47750
Os.56824.1.S1_at--611--3911Chr06:28897609..28897633 (25 bp)
CTGGACAACGTCGAATTCATCGGCT
LOC_Os06g47750
Os.56824.1.S1_at--332--10551Chr06:28897594..28897618 (25 bp)
TTCATCGGCTGATCAGACGTCTGAA
LOC_Os06g47750
Os.56824.1.S1_at--1087--1891Chr06:28897578..28897602 (25 bp)
ACGTCTGAATGTCTGTGATCTCCAA
LOC_Os06g47750
Os.56824.1.S1_at--1097--7391Chr06:28897564..28897588 (25 bp)
GTGATCTCCAATGGCGAACATGTCG
LOC_Os06g47750
Os.56824.1.S1_at--520--5491Chr06:28897549..28897573 (25 bp)
GAACATGTCGGATTGTTCTGCCAAA
LOC_Os06g47750
Os.56824.1.S1_at--81--6731Chr06:28897535..28897559 (25 bp)
GTTCTGCCAAAATGGAGCATTTCTG
LOC_Os06g47750
Os.56824.1.S1_at--679--4951Chr06:28897519..28897543 (25 bp)
GCATTTCTGTATGCTGAGCAGGTGT
LOC_Os06g47750
Os.56824.1.S1_at--727--5511Chr06:28897459..28897483 (25 bp)
GAAAATTACGTATCGGTGGAGCAGT
LOC_Os06g47750
Os.56824.1.S1_at--449--8531Chr06:28897443..28897467 (25 bp)
TGGAGCAGTGAGTTGCTTAACAATC
NONE
Target Sequence 
GAGCCGGCCGGCGATACAGGACATTGTTAGTTGGCTGGACAACGTCGAATTCATCGGCTGATCAGACGTCTGAATGTCTG
TGATCTCCAATGGCGAACATGTCGGATTGTTCTGCCAAAATGGAGCATTTCTGTATGCTGAGCAGGTGTTGAAAAATGCA
AAAATGACTGTAATCTGAACAGTGGAAAATTACGTATCGGTGGAGCAGTGAGTTGCTTAACAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis